PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
---|---|---|
Aquilegia coerulea (187) | Aqcoe0085s0001.1.p | FAR1 family protein |
Aqcoe1G062600.1.p | FAR1 family protein | |
Aqcoe1G118200.1.p | FAR1 family protein | |
Aqcoe1G128700.1.p | FAR1 family protein | |
Aqcoe1G128700.2.p | FAR1 family protein | |
Aqcoe1G129100.1.p | FAR1 family protein | |
Aqcoe1G184300.1.p | FAR1 family protein | |
Aqcoe1G204800.1.p | FAR1 family protein | |
Aqcoe1G238500.1.p | FAR1 family protein | |
Aqcoe1G264600.1.p | FAR1 family protein | |
Aqcoe1G296300.1.p | FAR1 family protein | |
Aqcoe1G300200.1.p | FAR1 family protein | |
Aqcoe1G305700.1.p | FAR1 family protein | |
Aqcoe1G330100.1.p | FAR1 family protein | |
Aqcoe1G339000.1.p | FAR1 family protein | |
Aqcoe1G347200.1.p | FAR1 family protein | |
Aqcoe1G355200.1.p | FAR1 family protein | |
Aqcoe1G355700.1.p | FAR1 family protein | |
Aqcoe1G355700.2.p | FAR1 family protein | |
Aqcoe1G355700.3.p | FAR1 family protein | |
Aqcoe1G357900.1.p | FAR1 family protein | |
Aqcoe1G361100.1.p | FAR1 family protein | |
Aqcoe1G367500.1.p | FAR1 family protein | |
Aqcoe1G433200.1.p | FAR1 family protein | |
Aqcoe2G020000.1.p | FAR1 family protein | |
Aqcoe2G053200.1.p | FAR1 family protein | |
Aqcoe2G069000.1.p | FAR1 family protein | |
Aqcoe2G071100.1.p | FAR1 family protein | |
Aqcoe2G133900.1.p | FAR1 family protein | |
Aqcoe2G141900.1.p | FAR1 family protein | |
Aqcoe2G145000.1.p | FAR1 family protein | |
Aqcoe2G145900.1.p | FAR1 family protein | |
Aqcoe2G156500.1.p | FAR1 family protein | |
Aqcoe2G166200.1.p | FAR1 family protein | |
Aqcoe2G230300.1.p | FAR1 family protein | |
Aqcoe2G272900.1.p | FAR1 family protein | |
Aqcoe2G277700.1.p | FAR1 family protein | |
Aqcoe2G340600.1.p | FAR1 family protein | |
Aqcoe2G340600.2.p | FAR1 family protein | |
Aqcoe2G340600.3.p | FAR1 family protein | |
Aqcoe2G340600.4.p | FAR1 family protein | |
Aqcoe2G361300.1.p | FAR1 family protein | |
Aqcoe2G430200.1.p | FAR1 family protein | |
Aqcoe2G430800.1.p | FAR1 family protein | |
Aqcoe2G430800.2.p | FAR1 family protein | |
Aqcoe2G430800.3.p | FAR1 family protein | |
Aqcoe2G432800.1.p | FAR1 family protein | |
Aqcoe2G432800.2.p | FAR1 family protein | |
Aqcoe2G434100.1.p | FAR1 family protein | |
Aqcoe2G434200.1.p | FAR1 family protein | |
Aqcoe2G434200.2.p | FAR1 family protein | |
Aqcoe2G434200.3.p | FAR1 family protein | |
Aqcoe2G434200.4.p | FAR1 family protein | |
Aqcoe2G434200.5.p | FAR1 family protein | |
Aqcoe2G434200.6.p | FAR1 family protein | |
Aqcoe2G434200.7.p | FAR1 family protein | |
Aqcoe2G434600.1.p | FAR1 family protein | |
Aqcoe2G434600.2.p | FAR1 family protein | |
Aqcoe2G434600.3.p | FAR1 family protein | |
Aqcoe3G011900.1.p | FAR1 family protein | |
Aqcoe3G011900.2.p | FAR1 family protein | |
Aqcoe3G011900.3.p | FAR1 family protein | |
Aqcoe3G021400.1.p | FAR1 family protein | |
Aqcoe3G102500.1.p | FAR1 family protein | |
Aqcoe3G102500.2.p | FAR1 family protein | |
Aqcoe3G102500.3.p | FAR1 family protein | |
Aqcoe3G109600.1.p | FAR1 family protein | |
Aqcoe3G164600.1.p | FAR1 family protein | |
Aqcoe3G164600.2.p | FAR1 family protein | |
Aqcoe3G185300.1.p | FAR1 family protein | |
Aqcoe3G194000.1.p | FAR1 family protein | |
Aqcoe3G194000.2.p | FAR1 family protein | |
Aqcoe3G201700.1.p | FAR1 family protein | |
Aqcoe3G222700.1.p | FAR1 family protein | |
Aqcoe3G230000.1.p | FAR1 family protein | |
Aqcoe3G230000.2.p | FAR1 family protein | |
Aqcoe3G230000.3.p | FAR1 family protein | |
Aqcoe3G244100.1.p | FAR1 family protein | |
Aqcoe3G271500.1.p | FAR1 family protein | |
Aqcoe3G292700.1.p | FAR1 family protein | |
Aqcoe3G292700.2.p | FAR1 family protein | |
Aqcoe3G292700.3.p | FAR1 family protein | |
Aqcoe3G292700.4.p | FAR1 family protein | |
Aqcoe3G359300.1.p | FAR1 family protein | |
Aqcoe3G375000.1.p | FAR1 family protein | |
Aqcoe3G382500.1.p | FAR1 family protein | |
Aqcoe4G046300.1.p | FAR1 family protein | |
Aqcoe4G085000.1.p | FAR1 family protein | |
Aqcoe4G092200.1.p | FAR1 family protein | |
Aqcoe4G105500.1.p | FAR1 family protein | |
Aqcoe4G105500.2.p | FAR1 family protein | |
Aqcoe4G105500.3.p | FAR1 family protein | |
Aqcoe4G140600.1.p | FAR1 family protein | |
Aqcoe4G146900.1.p | FAR1 family protein | |
Aqcoe4G173500.1.p | FAR1 family protein | |
Aqcoe4G189500.1.p | FAR1 family protein | |
Aqcoe4G190200.1.p | FAR1 family protein | |
Aqcoe4G191200.1.p | FAR1 family protein | |
Aqcoe4G191200.2.p | FAR1 family protein | |
Aqcoe4G218300.1.p | FAR1 family protein | |
Aqcoe4G219400.1.p | FAR1 family protein | |
Aqcoe4G267800.1.p | FAR1 family protein | |
Aqcoe4G270700.1.p | FAR1 family protein | |
Aqcoe4G311000.1.p | FAR1 family protein | |
Aqcoe4G312500.1.p | FAR1 family protein | |
Aqcoe5G001300.1.p | FAR1 family protein | |
Aqcoe5G001300.2.p | FAR1 family protein | |
Aqcoe5G001300.3.p | FAR1 family protein | |
Aqcoe5G001300.4.p | FAR1 family protein | |
Aqcoe5G028800.1.p | FAR1 family protein | |
Aqcoe5G112700.1.p | FAR1 family protein | |
Aqcoe5G112900.1.p | FAR1 family protein | |
Aqcoe5G141100.1.p | FAR1 family protein | |
Aqcoe5G165600.1.p | FAR1 family protein | |
Aqcoe5G184200.1.p | FAR1 family protein | |
Aqcoe5G259300.1.p | FAR1 family protein | |
Aqcoe5G264500.1.p | FAR1 family protein | |
Aqcoe5G270100.1.p | FAR1 family protein | |
Aqcoe5G276000.1.p | FAR1 family protein | |
Aqcoe5G299600.1.p | FAR1 family protein | |
Aqcoe5G300500.1.p | FAR1 family protein | |
Aqcoe5G314600.1.p | FAR1 family protein | |
Aqcoe5G314600.2.p | FAR1 family protein | |
Aqcoe5G314600.3.p | FAR1 family protein | |
Aqcoe5G314600.4.p | FAR1 family protein | |
Aqcoe5G320000.1.p | FAR1 family protein | |
Aqcoe5G354500.1.p | FAR1 family protein | |
Aqcoe5G354600.1.p | FAR1 family protein | |
Aqcoe5G405300.1.p | FAR1 family protein | |
Aqcoe5G410800.1.p | FAR1 family protein | |
Aqcoe5G410800.2.p | FAR1 family protein | |
Aqcoe5G410800.3.p | FAR1 family protein | |
Aqcoe5G410800.4.p | FAR1 family protein | |
Aqcoe5G435400.1.p | FAR1 family protein | |
Aqcoe6G001800.1.p | FAR1 family protein | |
Aqcoe6G022200.1.p | FAR1 family protein | |
Aqcoe6G022200.2.p | FAR1 family protein | |
Aqcoe6G022200.3.p | FAR1 family protein | |
Aqcoe6G022200.4.p | FAR1 family protein | |
Aqcoe6G023600.1.p | FAR1 family protein | |
Aqcoe6G023700.1.p | FAR1 family protein | |
Aqcoe6G204400.1.p | FAR1 family protein | |
Aqcoe6G224800.1.p | FAR1 family protein | |
Aqcoe6G226900.1.p | FAR1 family protein | |
Aqcoe6G242900.1.p | FAR1 family protein | |
Aqcoe6G242900.2.p | FAR1 family protein | |
Aqcoe6G257700.1.p | FAR1 family protein | |
Aqcoe6G278000.1.p | FAR1 family protein | |
Aqcoe6G281600.1.p | FAR1 family protein | |
Aqcoe6G309000.1.p | FAR1 family protein | |
Aqcoe6G314500.1.p | FAR1 family protein | |
Aqcoe6G325100.1.p | FAR1 family protein | |
Aqcoe6G325100.2.p | FAR1 family protein | |
Aqcoe6G325100.3.p | FAR1 family protein | |
Aqcoe6G325100.4.p | FAR1 family protein | |
Aqcoe7G147300.1.p | FAR1 family protein | |
Aqcoe7G165300.1.p | FAR1 family protein | |
Aqcoe7G165300.2.p | FAR1 family protein | |
Aqcoe7G165300.3.p | FAR1 family protein | |
Aqcoe7G165300.4.p | FAR1 family protein | |
Aqcoe7G165300.5.p | FAR1 family protein | |
Aqcoe7G165300.6.p | FAR1 family protein | |
Aqcoe7G165300.7.p | FAR1 family protein | |
Aqcoe7G166000.1.p | FAR1 family protein | |
Aqcoe7G173600.1.p | FAR1 family protein | |
Aqcoe7G180500.1.p | FAR1 family protein | |
Aqcoe7G180500.10.p | FAR1 family protein | |
Aqcoe7G180500.11.p | FAR1 family protein | |
Aqcoe7G180500.2.p | FAR1 family protein | |
Aqcoe7G180500.3.p | FAR1 family protein | |
Aqcoe7G180500.4.p | FAR1 family protein | |
Aqcoe7G180500.5.p | FAR1 family protein | |
Aqcoe7G180500.6.p | FAR1 family protein | |
Aqcoe7G180500.7.p | FAR1 family protein | |
Aqcoe7G180500.8.p | FAR1 family protein | |
Aqcoe7G180500.9.p | FAR1 family protein | |
Aqcoe7G207700.1.p | FAR1 family protein | |
Aqcoe7G236100.1.p | FAR1 family protein | |
Aqcoe7G237000.1.p | FAR1 family protein | |
Aqcoe7G237400.1.p | FAR1 family protein | |
Aqcoe7G247400.1.p | FAR1 family protein | |
Aqcoe7G247700.1.p | FAR1 family protein | |
Aqcoe7G279100.1.p | FAR1 family protein | |
Aqcoe7G279100.2.p | FAR1 family protein | |
Aqcoe7G318100.1.p | FAR1 family protein | |
Aqcoe7G330400.1.p | FAR1 family protein | |
Aqcoe7G433800.1.p | FAR1 family protein |
We show that Arabidopsis FHY3 and FAR1, which encode two proteins related to Mutator-like transposases, act together to modulate phyA signaling by directly activating the transcription of FHY1 and FHL, whose products are essential for light-induced phyA nuclear accumulation and subsequent light responses. FHY3 and FAR1 have separable DNA binding and transcriptional activation domains that are highly conserved in Mutator-like transposases. Further, expression of FHY3 and FAR1 is negatively regulated by phyA signaling. We propose that FHY3 and FAR1 represent transcription factors that have been co-opted from an ancient Mutator-like transposase(s) to modulate phyA-signaling homeostasis in higher plants.
We next used a yeast one-hybrid assay to delineate the DNA sequences to which FHY3 and FAR1 bind. GAD-FHY3 or GAD-FAR1 fusion proteins (GAD, GAL4 transcriptional activation domain), but not GAD alone, activated the LacZ reporter genes driven by the FHY1 and FHL promoters. Deletion analysis narrowed down the FHY3/FAR1 binding site to a 39-bp promoter subfragment located on the "a" fragment for both FHY1 and FHL. Notably, these subfragments share a stretch of consensus sequence, 5'-TTCACGCGCC-3'. Mutating the core sequence "CACGCGC" of this motif (m2 and m3 for FHY1, m5 for FHL) abolished the reporter gene activation by both GAD-FHY3 and GAD-FAR1. Mutating the flanking sequences (m1 and m4) did not obviously affect the reporter gene activation by GAD-FAR1, but clearly reduced activation by GAD-FHY3. Thus, "CACGCGC" likely defines a cis-element that confers specific binding for FHY3 and FAR1 and is named FBS for FHY3-FAR1 binding site.
Lin R, Ding L, Casola C, Ripoll DR, Feschotte C, Wang H.
Transposase-derived transcription factors regulate light signaling in Arabidopsis.
Science, 2007. 318(5854): p. 1302-5.
PMID: 18033885