PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PNH12927.1
Organism
Tetrabaena socialis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
Family C3H
Protein Properties Length: 347aa    MW: 33944.2 Da    PI: 8.4853
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PNH12927.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.93e-1287110427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 + C+ fa+tG C+yGd+CkFaH+p
  PNH12927.1  87 RTCMKFAQTGACNYGDNCKFAHVP 110
                 68********************86 PP
2zf-CCCH41.81.8e-13191216227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 kt+lC+ f+  G C+yGd+C+FaHg+
  PNH12927.1 191 KTRLCDKFMTLGACPYGDKCTFAHGM 216
                 9***********************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    
MFPNPAFFMG GAFGGPGMNN MGGMPGQGMP GFMGGQHMPG AGIPGPAGPM GQGGNDGSGG  60
YGHGGGGDGG GGGGGGGGRH GGDLRSRTCM KFAQTGACNY GDNCKFAHVP REGGAGGGQQ  120
GDRGAGGRRG GRGGDHRGGG DRGDYRGGGG GGGGGGGDRG FGGGGDRGGG GGAGSMVDDE  180
QGRKHSGVAR KTRLCDKFMT LGACPYGDKC TFAHGMEELR AAAPRESEAG PTPGQQPEPY  240
PGTSASRAVG AAQQSGKPAA GAQGDAATPA GSAKEVTFVD KVRALCGVLA IGNAAALAAE  300
KPLALQTAAM SLRNTAAFKE NPFADSVERY IQQQQQQQQQ VAAAPET
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-08C3H family protein