PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH12820.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

AP2

Protein Properties

Length: 1913aa MW: 185766 Da PI: 9.5925

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH12820.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	40.4	7.5e-13	758	807	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV+ ++++gr++A+I++ ++ ++g++gt eAa a+++ ++l+g PNH12820.1 758 SRFKGVSLYRRTGRYEAHIWHE-----GRQLHIGTYGTDVEAALAYDRVSRYLRG 807 789****************5.....4******99*******999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 1913 aa Download sequence
MRIKVLFFAR SREVAGVSEQ TFELADGADT ETLLADITSA YPALQSVMKT CVFALNQEYV 60 RPGDKEALKE GDEVAIIPPL SGGPALSKEQ QAAGSSAGRL ELQVDLGAAR IPVHDMAPQG 120 ADGRALSAAA RPPVAAAPRM RSAPRAVPHA AEPRGPGSSG APRTGAAGLA PPQVPQTPAS 180 APAPTSAKSL PTATARAAAS AALASPITKP KPTLTTAATT SPASATAAAA AAAAAAAAAA 240 AAASARVPAP PALRPELPAP PALPLAPRPL SRPLASKAPV SAAPMPPRPT REATHVASYA 300 AAAAASPTAG GGRPFATAPA RASTVQQQPA PAAADGLRQA VPPPPLTLPY ANVSPAPHAL 360 TPPSPPSSPL SPSPTPTPAP SPRALRQQQQ QHHHHQQQQQ QQQVHQHDQQ RASPSRAAER 420 EATAAAAPTA APAAVTKASP VNEGSCSGQP SPPATRGGVA GTARAPQPAV WPAAAADPAA 480 LAAALPAAHS AAPAAYIPQR GGRTDDTDAA QTRSRNSQPP SPLPRQSHAA LGAPGGRPGD 540 MALAGVTGKR SSSGGAQPTA SGSSGEETDG GCSAGGSGGA VHAAPHPSLD CVFATPPAAL 600 LLSDMLAGWC LERQARARAA QAEAAVREPA AAAPPGMAAD GARSWAPPER SLRQSHGGGS 660 GAYGGRPCGP QAEVEAEAEA EAEAAVVGGA VQQRHGRGGE GGVSAAGATA ARTLVHARSG 720 GGSASEGAGA AAALGAAGGW PAQGQDVVLA RGPRNRSSRF KGVSLYRRTG RYEAHIWHEG 780 RQLHIGTYGT DVEAALAYDR VSRYLRGPTA VLNFASEGAA AAAAASVAAS ASAAALSPAG 840 APAASPGIGT TGGAAEAPPC GQGGQRDRGG DAADTPPSPS PSLSLAPPQP PLPAAPAQQS 900 PSRHVLPYGL PPGLLPGASI GMGGGGTGRG LAAMPKPWPQ ELVHGSGSDG APTLAISAGG 960 SGYSCRSGAD AAAAANGSGA ADSHPAAAAT AAANAHARSV RRRLSAIDPA SQPLLLMLPP 1020 AVGRRASSHE SGAVAAAIER AASWARWQEA ATGCSGGGGA RGGGAAAAVR GSASGGVAAA 1080 AALAGGQAAL PPPQAPSAKL DRNWSCGSSN YSCGPSQSQT EWGEAAAGSG GGGGGAWPTA 1140 AEMLPYGVVD LAPPLLPPPG MLPQQQRLEW SRGHGSGGAS HGGWGGHGGS GSGGGGGYGS 1200 GPYGRTDSGV PRRSSGSSEG SGSGAAGGAA GADTTRGSSN ADLEGAAVLQ TLLAAGVPRE 1260 LLHAVLSTAV LSAATDTAAA AQAAQAGAPA APAASRPAPP PPPPPPRSSQ GGRPPYGASS 1320 GPMPYALQNG DRSYGVAPPP SAGDWQGAAA ASTAPDATAA RTANGSCGGG GGGGAHAEQP 1380 PSTLASRPPL PPGVQQQLQQ LQQLHQHQQH QHQQLHQQQQ QQQQQHQQQL LAAPHHKDAA 1440 VANILRQLTR SGGGGAAPGG AGAAQPRNAW AAPLQLPPPP SPPPPPSPPG VPSHPPALAL 1500 QLPAPGARSA PRVAPTAALT GTPSSPVGPA PVPALAVPPL RPGQQLLLDS AAATPSGALT 1560 PPERQWQVPP RSSESGEAPA GGGGGGGAYW VAGQLNGLEG GVGLLGAGAA KREAPRQGTE 1620 PAEAQRRGQG QALGQGVTVT PGDIRSLMLH YRQHAAARAA PTIAQAATAS PEAAVVAITS 1680 LVGPPGLAPP RTAAAVGPEP AGPGLPYGAA LGGKVYCIES DSDGGGGGGG GMSGRPSVAG 1740 VVRAEAVALS EAPMQEEAAA AMLLALSPAA ATPRAVLPPA APPASSKRPR DDSGGAAAAA 1800 AKLWGGGGAE PMCVDGGDGA HGSGGGSAAD GCGGGGGAGG GLGRPVMVGS SEASDGGGAC 1860 VKPASGAACT QRSGDTKPLL APAPPSPPLS LPLRAHPDKK TRLLYGRGGA KPC

Sequence ? help Back to Top

Protein Sequence Length: 1913 aa Download sequence

MRIKVLFFAR SREVAGVSEQ TFELADGADT ETLLADITSA YPALQSVMKT CVFALNQEYV  60
RPGDKEALKE GDEVAIIPPL SGGPALSKEQ QAAGSSAGRL ELQVDLGAAR IPVHDMAPQG  120
ADGRALSAAA RPPVAAAPRM RSAPRAVPHA AEPRGPGSSG APRTGAAGLA PPQVPQTPAS  180
APAPTSAKSL PTATARAAAS AALASPITKP KPTLTTAATT SPASATAAAA AAAAAAAAAA  240
AAASARVPAP PALRPELPAP PALPLAPRPL SRPLASKAPV SAAPMPPRPT REATHVASYA  300
AAAAASPTAG GGRPFATAPA RASTVQQQPA PAAADGLRQA VPPPPLTLPY ANVSPAPHAL  360
TPPSPPSSPL SPSPTPTPAP SPRALRQQQQ QHHHHQQQQQ QQQVHQHDQQ RASPSRAAER  420
EATAAAAPTA APAAVTKASP VNEGSCSGQP SPPATRGGVA GTARAPQPAV WPAAAADPAA  480
LAAALPAAHS AAPAAYIPQR GGRTDDTDAA QTRSRNSQPP SPLPRQSHAA LGAPGGRPGD  540
MALAGVTGKR SSSGGAQPTA SGSSGEETDG GCSAGGSGGA VHAAPHPSLD CVFATPPAAL  600
LLSDMLAGWC LERQARARAA QAEAAVREPA AAAPPGMAAD GARSWAPPER SLRQSHGGGS  660
GAYGGRPCGP QAEVEAEAEA EAEAAVVGGA VQQRHGRGGE GGVSAAGATA ARTLVHARSG  720
GGSASEGAGA AAALGAAGGW PAQGQDVVLA RGPRNRSSRF KGVSLYRRTG RYEAHIWHEG  780
RQLHIGTYGT DVEAALAYDR VSRYLRGPTA VLNFASEGAA AAAAASVAAS ASAAALSPAG  840
APAASPGIGT TGGAAEAPPC GQGGQRDRGG DAADTPPSPS PSLSLAPPQP PLPAAPAQQS  900
PSRHVLPYGL PPGLLPGASI GMGGGGTGRG LAAMPKPWPQ ELVHGSGSDG APTLAISAGG  960
SGYSCRSGAD AAAAANGSGA ADSHPAAAAT AAANAHARSV RRRLSAIDPA SQPLLLMLPP  1020
AVGRRASSHE SGAVAAAIER AASWARWQEA ATGCSGGGGA RGGGAAAAVR GSASGGVAAA  1080
AALAGGQAAL PPPQAPSAKL DRNWSCGSSN YSCGPSQSQT EWGEAAAGSG GGGGGAWPTA  1140
AEMLPYGVVD LAPPLLPPPG MLPQQQRLEW SRGHGSGGAS HGGWGGHGGS GSGGGGGYGS  1200
GPYGRTDSGV PRRSSGSSEG SGSGAAGGAA GADTTRGSSN ADLEGAAVLQ TLLAAGVPRE  1260
LLHAVLSTAV LSAATDTAAA AQAAQAGAPA APAASRPAPP PPPPPPRSSQ GGRPPYGASS  1320
GPMPYALQNG DRSYGVAPPP SAGDWQGAAA ASTAPDATAA RTANGSCGGG GGGGAHAEQP  1380
PSTLASRPPL PPGVQQQLQQ LQQLHQHQQH QHQQLHQQQQ QQQQQHQQQL LAAPHHKDAA  1440
VANILRQLTR SGGGGAAPGG AGAAQPRNAW AAPLQLPPPP SPPPPPSPPG VPSHPPALAL  1500
QLPAPGARSA PRVAPTAALT GTPSSPVGPA PVPALAVPPL RPGQQLLLDS AAATPSGALT  1560
PPERQWQVPP RSSESGEAPA GGGGGGGAYW VAGQLNGLEG GVGLLGAGAA KREAPRQGTE  1620
PAEAQRRGQG QALGQGVTVT PGDIRSLMLH YRQHAAARAA PTIAQAATAS PEAAVVAITS  1680
LVGPPGLAPP RTAAAVGPEP AGPGLPYGAA LGGKVYCIES DSDGGGGGGG GMSGRPSVAG  1740
VVRAEAVALS EAPMQEEAAA AMLLALSPAA ATPRAVLPPA APPASSKRPR DDSGGAAAAA  1800
AKLWGGGGAE PMCVDGGDGA HGSGGGSAAD GCGGGGGAGG GLGRPVMVGS SEASDGGGAC  1860
VKPASGAACT QRSGDTKPLL APAPPSPPLS LPLRAHPDKK TRLLYGRGGA KPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G39250.1	1e-11	AP2 family protein