PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH12668.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

NF-X1

Protein Properties

Length: 702aa MW: 72046.4 Da PI: 8.4565

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH12668.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	24	8.5e-08	159	178	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+HkC ++CH GpC pCp+ PNH12668.1 159 CGNHKCPAPCHSGPCRPCPL 178 ******************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence
MRIFDVAKGY FVAITSLFAG ASVVHYILKP DLVCHSGPCG ECPSAGERTC PCGRVSHEGL 60 SCADKVPTCG ETCGRLLACG VHRCRDRCHH GECTVECRGP TLKTCRCGKS QKEVLCLQDF 120 TCERRCGEVR ACGRHPCRRR CCDGNCPPCE EVCGRRLKCG NHKCPAPCHS GPCRPCPLTG 180 TVACACGRSA CTLPCGAESR AEAPHCAAPC SVPRICRHGP RLPPHRCHYG PCPPCPGPCA 240 TPLSCGHSCA TPTCHDPPPP PVPDFQQPPA PKAVSIAAAA AAAAAAAVAA AAAGGGDRER 300 ASRSGSAALP GPAVQQPTAL AAQILAATAA RGELPSACPP CVQPVQLACV GAHVRRPLPC 360 AQARPYCCAA ACGRPLQCGN HACGLPCHAV AYDAIATAVA AAAAAAAATS GYPDPLVPRP 420 CRQCDRRCDR PRGCAHPCKL ACHRGPCPRC EVQSRTACLC GRSTLQLACH QAVEAAGGDA 480 AAAAAVLSCG KPCHRQLRFC SHPCKAICHA GPCPDPAACA AEVNVRCDCP AKRRAKWRCS 540 EVQAALEQAG KPRAYDDSQA PRLLPCDADC AKARAKGAAA AAPPPPAASK AAAASTAADA 600 AAESSRAGQG GSGAQVVAVE AAAGGKGGKA RLSRAEREAA AAAKEAERLR QERLSRVVRG 660 VLLAVVVALG VLLALGARQA MAWLDARMYA PVTIPMRKAP PH

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence

MRIFDVAKGY FVAITSLFAG ASVVHYILKP DLVCHSGPCG ECPSAGERTC PCGRVSHEGL  60
SCADKVPTCG ETCGRLLACG VHRCRDRCHH GECTVECRGP TLKTCRCGKS QKEVLCLQDF  120
TCERRCGEVR ACGRHPCRRR CCDGNCPPCE EVCGRRLKCG NHKCPAPCHS GPCRPCPLTG  180
TVACACGRSA CTLPCGAESR AEAPHCAAPC SVPRICRHGP RLPPHRCHYG PCPPCPGPCA  240
TPLSCGHSCA TPTCHDPPPP PVPDFQQPPA PKAVSIAAAA AAAAAAAVAA AAAGGGDRER  300
ASRSGSAALP GPAVQQPTAL AAQILAATAA RGELPSACPP CVQPVQLACV GAHVRRPLPC  360
AQARPYCCAA ACGRPLQCGN HACGLPCHAV AYDAIATAVA AAAAAAAATS GYPDPLVPRP  420
CRQCDRRCDR PRGCAHPCKL ACHRGPCPRC EVQSRTACLC GRSTLQLACH QAVEAAGGDA  480
AAAAAVLSCG KPCHRQLRFC SHPCKAICHA GPCPDPAACA AEVNVRCDCP AKRRAKWRCS  540
EVQAALEQAG KPRAYDDSQA PRLLPCDADC AKARAKGAAA AAPPPPAASK AAAASTAADA  600
AAESSRAGQG GSGAQVVAVE AAAGGKGGKA RLSRAEREAA AAAKEAERLR QERLSRVVRG  660
VLLAVVVALG VLLALGARQA MAWLDARMYA PVTIPMRKAP PH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	6e-57	NF-X1 family protein