PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH12458.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

SBP

Protein Properties

Length: 1094aa MW: 107300 Da PI: 6.2481

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH12458.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	67	4e-21	62	143	2	73
-SSTT-----TT--HHHH..........HTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT------ CS SBP 2 CqvegCeadlseakeyhr..........rhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerr 73 C+v+gC adl++ y+r ++++C+ h k+p +v+g+ rfCqqCsrfh++ efD +r+Cr+ L++ +r PNH12458.1 62 CRVPGCGADLTKDLAYFRscrgrgggvgKYRICREHLKSPLLMVEGVPSRFCQQCSRFHNVAEFDGPQRTCRTMLERLRIKR 143 **************98666666666679*****************************************999765555 PP

Sequence ? help Back to Top
Protein Sequence Length: 1094 aa Download sequence
MSSEGDPHAR WSLSDVHWDG LTLQARAAGP DSAPPVPELK KYYIKGRAGA APSSPSVAST 60 LCRVPGCGAD LTKDLAYFRS CRGRGGGVGK YRICREHLKS PLLMVEGVPS RFCQQCSRFH 120 NVAEFDGPQR TCRTMLERLR IKRNSGKPVG SGRRGKDSMR EAEAAAQPGS SGSHSNSSGK 180 GTEEAGSHPA PASRRGLLPS SSEGADSGPK QRTVGDGASL HAASQPLSAV QQLSLGASCS 240 AAALLPLSRL GGPLEFALPQ GGARLPPPCG HPAAAAPVGG GGGGLPECNS DFPSLVGGLR 300 TVDAARTGVA AAAANFILHV GGPGGGGAAG SAGGGGGVRS PLFLDAPYGQ SYVRQQQPYG 360 QQFGAPGAAL LAGQGVGPQA GLQPERLLQQ REPRDGPGAQ GRGALSGLQR ASTPSAGDLV 420 GGLLQEPGGA GGGGPQSRYP APVGRVAGDM GLEEQLRDMY RESDFLRLHN QQQVQGSVKR 480 KLEPSSSAPT PGPHGTPQGP APAQPLSSAA YMTDLLGLLP FSGQDMEAME MDTSAHAMAA 540 AGARPAGHGQ ARDPQAGLAS AALGGQSQSM AAMLDEAGGG HGMQLNLPTL ASSSGYHPTA 600 SGGGTASGGA VHDGSRGGGG RPASSDTCFS DARASADGGS QMAAAYGSMY GGNMYGGGSS 660 RALAGMAAIP EAGDGRVGGW ASPDDVDAAL DLLMDEAGFG AVYDTRCDAE KSLLYYRGAA 720 ATAAASTATP SPVTSATAYR SWGSDAPISD HGTGPVPPAG DNSTDMALEC PSPAAVGAGA 780 GAGAAADSAT APAAAATVAA YSGAGIARRS ENTVDSAEDY RERALLRRDA ASLADVVAAL 840 ELLEVGVITR GTSTGAGAGA RAVAGAEGGG PAGMPAAGVP AWAVEQAAGA AAAAPRAGAV 900 AEDAAALATA GGGSVGSAVA AVMPFMGDST DDWLATRRRL RAVAAEAAGA VAEAAEAMAA 960 AHPKEVLVGE GGGPVDWRRA DGKKGDGDGG YGGCGGQGGE GQQGFAADRG EAAFDDFRSA 1020 AGSSCSGVAV EVAAAGPKGG GSPRSSVAVG VLAAAAVGLL CGGGVLPAIV LLAVVALVEA 1080 AAKAGVFGAA GARA

Sequence ? help Back to Top

Protein Sequence Length: 1094 aa Download sequence

MSSEGDPHAR WSLSDVHWDG LTLQARAAGP DSAPPVPELK KYYIKGRAGA APSSPSVAST  60
LCRVPGCGAD LTKDLAYFRS CRGRGGGVGK YRICREHLKS PLLMVEGVPS RFCQQCSRFH  120
NVAEFDGPQR TCRTMLERLR IKRNSGKPVG SGRRGKDSMR EAEAAAQPGS SGSHSNSSGK  180
GTEEAGSHPA PASRRGLLPS SSEGADSGPK QRTVGDGASL HAASQPLSAV QQLSLGASCS  240
AAALLPLSRL GGPLEFALPQ GGARLPPPCG HPAAAAPVGG GGGGLPECNS DFPSLVGGLR  300
TVDAARTGVA AAAANFILHV GGPGGGGAAG SAGGGGGVRS PLFLDAPYGQ SYVRQQQPYG  360
QQFGAPGAAL LAGQGVGPQA GLQPERLLQQ REPRDGPGAQ GRGALSGLQR ASTPSAGDLV  420
GGLLQEPGGA GGGGPQSRYP APVGRVAGDM GLEEQLRDMY RESDFLRLHN QQQVQGSVKR  480
KLEPSSSAPT PGPHGTPQGP APAQPLSSAA YMTDLLGLLP FSGQDMEAME MDTSAHAMAA  540
AGARPAGHGQ ARDPQAGLAS AALGGQSQSM AAMLDEAGGG HGMQLNLPTL ASSSGYHPTA  600
SGGGTASGGA VHDGSRGGGG RPASSDTCFS DARASADGGS QMAAAYGSMY GGNMYGGGSS  660
RALAGMAAIP EAGDGRVGGW ASPDDVDAAL DLLMDEAGFG AVYDTRCDAE KSLLYYRGAA  720
ATAAASTATP SPVTSATAYR SWGSDAPISD HGTGPVPPAG DNSTDMALEC PSPAAVGAGA  780
GAGAAADSAT APAAAATVAA YSGAGIARRS ENTVDSAEDY RERALLRRDA ASLADVVAAL  840
ELLEVGVITR GTSTGAGAGA RAVAGAEGGG PAGMPAAGVP AWAVEQAAGA AAAAPRAGAV  900
AEDAAALATA GGGSVGSAVA AVMPFMGDST DDWLATRRRL RAVAAEAAGA VAEAAEAMAA  960
AHPKEVLVGE GGGPVDWRRA DGKKGDGDGG YGGCGGQGGE GQQGFAADRG EAAFDDFRSA  1020
AGSSCSGVAV EVAAAGPKGG GSPRSSVAVG VLAAAAVGLL CGGGVLPAIV LLAVVALVEA  1080
AAKAGVFGAA GARA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	2e-15	SBP family protein