PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH12315.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

MYB

Protein Properties

Length: 413aa MW: 43977 Da PI: 8.874

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH12315.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.3	2e-14	17	72	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48 +g W++ Ed +l+++v+++G g+W+ Iar+++ gR +kqc++r++ +l PNH12315.1 17 KGGWSPAEDAILKRLVEEHGQGNWSVIARHLNattgtpseSGRIGKQCRERFNHHL 72 688*************************************************9875 PP
2	Myb_DNA-binding	60.8	2.9e-19	78	120	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ellv a+ ++G++ W+ Iar+++ gRt++++k++w+ PNH12315.1 78 KDAWTEEEEELLVAAHLRFGNR-WSDIARHIQ-GRTENSVKNHWN 120 689*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MSLEAERRRR YPLAKVKGGW SPAEDAILKR LVEEHGQGNW SVIARHLNAT TGTPSESGRI 60 GKQCRERFNH HLRPDIKKDA WTEEEEELLV AAHLRFGNRW SDIARHIQGR TENSVKNHWN 120 ATLRRKDGDR CGGRSGPPPQ SCVLRDYMVR IALLACPEHG SPARAGRAEP PAAPLAVVLT 180 AGGPASLLAD AALPEASSKR GLSDGGEEAA APVGLGGTEQ QRTCGTVAGA EAGPASSPCS 240 STSTQAGLGL HSGGRDVEGP AASASAEQEA AQAPERKRPR IITFAAAPAS PLHPQQPRSL 300 HAAEPGSRQQ RQRTLTAKAA LRSQEPGPRP QPHPHNRLRQ QQRPYQHPQL GGASDSAEES 360 LYGSPVSERL GWLAAYDAGG EAAKADPYGM EQASSSEVQA AQIMLALRSL TGC

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MSLEAERRRR YPLAKVKGGW SPAEDAILKR LVEEHGQGNW SVIARHLNAT TGTPSESGRI  60
GKQCRERFNH HLRPDIKKDA WTEEEEELLV AAHLRFGNRW SDIARHIQGR TENSVKNHWN  120
ATLRRKDGDR CGGRSGPPPQ SCVLRDYMVR IALLACPEHG SPARAGRAEP PAAPLAVVLT  180
AGGPASLLAD AALPEASSKR GLSDGGEEAA APVGLGGTEQ QRTCGTVAGA EAGPASSPCS  240
STSTQAGLGL HSGGRDVEGP AASASAEQEA AQAPERKRPR IITFAAAPAS PLHPQQPRSL  300
HAAEPGSRQQ RQRTLTAKAA LRSQEPGPRP QPHPHNRLRQ QQRPYQHPQL GGASDSAEES  360
LYGSPVSERL GWLAAYDAGG EAAKADPYGM EQASSSEVQA AQIMLALRSL TGC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	6	11	ERRRRY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11050.1	1e-35	MYB family protein