PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH11952.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

MYB_related

Protein Properties

Length: 2998aa MW: 294366 Da PI: 6.4326

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH11952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.2	3.7e-08	723	764	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+ Ed+ll + +++G + W++Ia+++ +R+ q+ +r+ + PNH11952.1 723 WTEAEDDLLEYGMHMYGFD-WRRIASRLLVNRSHAQVANRYKN 764 *****************.*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 2998 aa Download sequence
MPTIDVALPV SPDPEHASSS PPFSPQTCLP CAESYAPPAS LQQQLTPGAR GASQPSPSQQ 60 QCPPSTAAAD RRTRAGAPAP AKQRRDGTAR SRGTGPGSGA AQHGSAPASH GAPQQPDQPD 120 DRQHQSDQTP PKHADDQGST HAALAPRPPF AAQQQQQQQE QEEGQELALI PPVFQQGALD 180 AGVLVGVEGL GGQQLLQQLD GGGGLFGHPL QQQQQQQQQG AFPFGVEPQL APWDAQPPQP 240 GLPSPDPAAW PPSGGICRRT RAHVCLRDIG MDELEQQLPD HIDMEEIEAA EDDEEYGKFL 300 EGLFDDGSAP LPDDPGSDED PDFLADLDLD FEDDDDNSRG GANGRGGGGG GRVMGGGWMR 360 LLNSPERGEG GGSGSDSPAR RTRAWSRRHG AARGCSEPPE RADAARGQRA VGMTAEQLAT 420 LHAQLHCHSQ MLLQSYAMLT GDADAEAQKL AASTAALLDR LEAVRDTQAA ARQASGLGPH 480 GAEALCPATQ LLPLPLPVAL APPKPPPTAL PGGGGGRGGG VPAALVAQQL EAAGAAGDAA 540 SAAAAVAAIA AAAAALAQTE AAGGRGGDGA GSAEEPEAAE AEAEGGERAA AGGAYTKCTI 600 AQKAAATARS VALAQAIRSF RPAWAPGRGG VVWSVMDTVP LRWYRHVQAA LRTLPPQPDS 660 ALQQHRELLS CDKVQRRGQR RRRKVDPLVG ALAWAQPALR CLQGHLLTAL IYCPSPPRPI 720 SYWTEAEDDL LEYGMHMYGF DWRRIASRLL VNRSHAQVAN RYKNINARGG RAVHQVQALA 780 AAADAAAAAD CGAGVEAATA PAAPAGEKAG ARGKKAKVKS AAAGAKQQAE VDGMAALPLA 840 EPLAATQQQQ QGPRPLQLSS ELSLGAAAKS REQAQQQQKA QAIEQAIAQA IAQQQAQQKT 900 QAQQQAQRQA QQQAQQQAQQ QAQRLALAVA HATQAAHTAL AAQAGAPLLS SASLPASTSL 960 QLPPHSGPNY AAMLHAARMA GLPPAVAAAQ IRQAERYLIP QQLSVSAALQ LVAQLQGGQS 1020 GGAQPDAAAV AARMQLGAAE QQAQQNKAAG LQEALRQLLL QQRLQQQHAA PAGEVPQGTA 1080 AAAVPGLAAS TQEQRQQLHS AALASTMRLL QQQQQQQQQA QVVGPQAPRL ASSGLQDGVP 1140 RIIPLAGPLA GVLLPLPAAT VAAGAAAAQP QHQAAPVGTS GAAAEPSGPG MLAVPAPIGA 1200 GAVAAAAVAK DANLHGDGSG GSPLDDCDED GDLRMGGGHG EDEGTLGEAP WGLGFEVSRG 1260 LWSPPAAHSL PPSLPELGVP RQGAASTCAG TVEPPPPLDS SAAAAAGQPQ APSSGPVAWA 1320 APTDPRLQQH AQHVQPPPHH HPLPAGGGPR LPQPPPHRPY EQLPPASPPA SHPPPPDLPT 1380 FSDDNMTLGG LSDLLGPSGA ATPATCLSPN GGGPSLLSQG HTMSLLLGRL RRSGAATPAT 1440 CLSPAGGGGA TSVLSQGHTM SLLLGSLGFT EALQQDGGTP TKSVAAGPRR PSAGSPPAAD 1500 GPPAKAPAAE GVAAVAAEAA AGGAGVKLPA APSPGGAQPS GLARGAALRP AMPAPHAANL 1560 RSPTSPISGG GAAAAKPTPG RGGALRSALL ASALRCAADV TPSSDPKAKR RSRIGAAALA 1620 EAGMRGGGGS GGSEVAPSPF EGTAQNDDRR GRGPGRPRPP LFSSEGGAEG PTAEAGARGR 1680 GPGGGSGGGG GRGGGGGGRM ATTLEGMEEV SEGVEAEEGA EEEAAAAEGL ERARKRLRLD 1740 LVEEEAGGEA APDAMDAATP SRRQAPVQAG PQCPAPPPVA TAAAAAEGAA APGPAEARTA 1800 APNAAAEGGG IMAQAAAPAA RLFTALPSSS ATRSSTGAGS PRSCDDAGGG DPQQQAAAGP 1860 AAAAGAAATV GAKRPAVADG TGGPTVGAKR ARSGLLARPP RATSGAEPAL TDAAEQPGMA 1920 AAAAPAAAAA TAGRAAAQKR SRVGAGKAVA PAADAVAEAA PEEPPAGAAT AAPSAERPAM 1980 AAAMAAAEAA AGERSQPAAA ACTAGAPAVS VAADSAAATE EPLAHQAVAP ARAPRPRAPP 2040 RRGPQRSARA AAADAPAATG PTEAPTIHHP RPRPPLPHRA RQHTAYFASP PLPSFISPTL 2100 SFYPENSLGC TNSLHALLCG GEADTLLGGA LDILSLLPCI STRSMGAAAA SSSPPPPGDG 2160 GSGGPPGTAT AAVAQQAAGA AAPRAPLGAG AGIPGSVRAS VAHRGGGAAA TAGFLSPPRS 2220 SLLQVTPYAQ STWTMGSLDC LPLFSGASAD MWQSLVGGNS VLGTATGIAA AAGGGEAGGA 2280 AGAGRVVATG TTASDGGGDA RAHAAAGAGS GAGAGGGAGA GPGIDTPMDP WSRFMASCGS 2340 PPPPPSQSNS ATYRSERSLS AFRPYGLGSG AGGGGSGRAC GPRSAVGTTA AVATTTADEE 2400 RPAGGGADGG CDLGEVAAAV AHAGCGGTVA AACTSSAAGN GGGAAAASAP KPQDDAQPTT 2460 AEGIAVACPT TTAAGHPRSV AAAVALAEAP RDRGSEVVSE QAADEEAADV AASCGRAVDI 2520 SAGEAAVASA PLPAAAAGST AAAMETDLPG PSTLQLPPLP PPPPPPTAPR AASFPSLGNG 2580 APPETVRLFG RTVTKPAPLA TAGAMPPAPP LQRRAQLLPA AAPSPAPAPP TAAAAPAAAK 2640 QMHQGPHHPL VGAPWLTPAA QGRASGGQNR HATAAAEASG GGGLMSPPTA TPMACAPPAV 2700 AGSRYGAHGP PAQHTPLPLA GTGADPAPPD SQGCVAVAAP LALTPLQAAS EAGSGGAANV 2760 GGGGFASVGR GTVRVGMPYG RHAPPSAAAS HWASHDPSDQ AAGPPGLQPG GASPGERWPG 2820 WRGRAAAAAP ANTPGHVSCC SQVAWRGHGR AAGGGDADPL ATPSAPEQQQ ASPAPVPLPA 2880 AEQHAADAGC SLPNGPEGAT AAAGAISGAA PSTADAVAAV VGVPAAAAGV AGAGGEDPAA 2940 AGPAWGKEQD RMVLRETFLL GAGPATWEAI AARLGGGWGV EAVERRAGQL MQQAMALM

Sequence ? help Back to Top

Protein Sequence Length: 2998 aa Download sequence

MPTIDVALPV SPDPEHASSS PPFSPQTCLP CAESYAPPAS LQQQLTPGAR GASQPSPSQQ  60
QCPPSTAAAD RRTRAGAPAP AKQRRDGTAR SRGTGPGSGA AQHGSAPASH GAPQQPDQPD  120
DRQHQSDQTP PKHADDQGST HAALAPRPPF AAQQQQQQQE QEEGQELALI PPVFQQGALD  180
AGVLVGVEGL GGQQLLQQLD GGGGLFGHPL QQQQQQQQQG AFPFGVEPQL APWDAQPPQP  240
GLPSPDPAAW PPSGGICRRT RAHVCLRDIG MDELEQQLPD HIDMEEIEAA EDDEEYGKFL  300
EGLFDDGSAP LPDDPGSDED PDFLADLDLD FEDDDDNSRG GANGRGGGGG GRVMGGGWMR  360
LLNSPERGEG GGSGSDSPAR RTRAWSRRHG AARGCSEPPE RADAARGQRA VGMTAEQLAT  420
LHAQLHCHSQ MLLQSYAMLT GDADAEAQKL AASTAALLDR LEAVRDTQAA ARQASGLGPH  480
GAEALCPATQ LLPLPLPVAL APPKPPPTAL PGGGGGRGGG VPAALVAQQL EAAGAAGDAA  540
SAAAAVAAIA AAAAALAQTE AAGGRGGDGA GSAEEPEAAE AEAEGGERAA AGGAYTKCTI  600
AQKAAATARS VALAQAIRSF RPAWAPGRGG VVWSVMDTVP LRWYRHVQAA LRTLPPQPDS  660
ALQQHRELLS CDKVQRRGQR RRRKVDPLVG ALAWAQPALR CLQGHLLTAL IYCPSPPRPI  720
SYWTEAEDDL LEYGMHMYGF DWRRIASRLL VNRSHAQVAN RYKNINARGG RAVHQVQALA  780
AAADAAAAAD CGAGVEAATA PAAPAGEKAG ARGKKAKVKS AAAGAKQQAE VDGMAALPLA  840
EPLAATQQQQ QGPRPLQLSS ELSLGAAAKS REQAQQQQKA QAIEQAIAQA IAQQQAQQKT  900
QAQQQAQRQA QQQAQQQAQQ QAQRLALAVA HATQAAHTAL AAQAGAPLLS SASLPASTSL  960
QLPPHSGPNY AAMLHAARMA GLPPAVAAAQ IRQAERYLIP QQLSVSAALQ LVAQLQGGQS  1020
GGAQPDAAAV AARMQLGAAE QQAQQNKAAG LQEALRQLLL QQRLQQQHAA PAGEVPQGTA  1080
AAAVPGLAAS TQEQRQQLHS AALASTMRLL QQQQQQQQQA QVVGPQAPRL ASSGLQDGVP  1140
RIIPLAGPLA GVLLPLPAAT VAAGAAAAQP QHQAAPVGTS GAAAEPSGPG MLAVPAPIGA  1200
GAVAAAAVAK DANLHGDGSG GSPLDDCDED GDLRMGGGHG EDEGTLGEAP WGLGFEVSRG  1260
LWSPPAAHSL PPSLPELGVP RQGAASTCAG TVEPPPPLDS SAAAAAGQPQ APSSGPVAWA  1320
APTDPRLQQH AQHVQPPPHH HPLPAGGGPR LPQPPPHRPY EQLPPASPPA SHPPPPDLPT  1380
FSDDNMTLGG LSDLLGPSGA ATPATCLSPN GGGPSLLSQG HTMSLLLGRL RRSGAATPAT  1440
CLSPAGGGGA TSVLSQGHTM SLLLGSLGFT EALQQDGGTP TKSVAAGPRR PSAGSPPAAD  1500
GPPAKAPAAE GVAAVAAEAA AGGAGVKLPA APSPGGAQPS GLARGAALRP AMPAPHAANL  1560
RSPTSPISGG GAAAAKPTPG RGGALRSALL ASALRCAADV TPSSDPKAKR RSRIGAAALA  1620
EAGMRGGGGS GGSEVAPSPF EGTAQNDDRR GRGPGRPRPP LFSSEGGAEG PTAEAGARGR  1680
GPGGGSGGGG GRGGGGGGRM ATTLEGMEEV SEGVEAEEGA EEEAAAAEGL ERARKRLRLD  1740
LVEEEAGGEA APDAMDAATP SRRQAPVQAG PQCPAPPPVA TAAAAAEGAA APGPAEARTA  1800
APNAAAEGGG IMAQAAAPAA RLFTALPSSS ATRSSTGAGS PRSCDDAGGG DPQQQAAAGP  1860
AAAAGAAATV GAKRPAVADG TGGPTVGAKR ARSGLLARPP RATSGAEPAL TDAAEQPGMA  1920
AAAAPAAAAA TAGRAAAQKR SRVGAGKAVA PAADAVAEAA PEEPPAGAAT AAPSAERPAM  1980
AAAMAAAEAA AGERSQPAAA ACTAGAPAVS VAADSAAATE EPLAHQAVAP ARAPRPRAPP  2040
RRGPQRSARA AAADAPAATG PTEAPTIHHP RPRPPLPHRA RQHTAYFASP PLPSFISPTL  2100
SFYPENSLGC TNSLHALLCG GEADTLLGGA LDILSLLPCI STRSMGAAAA SSSPPPPGDG  2160
GSGGPPGTAT AAVAQQAAGA AAPRAPLGAG AGIPGSVRAS VAHRGGGAAA TAGFLSPPRS  2220
SLLQVTPYAQ STWTMGSLDC LPLFSGASAD MWQSLVGGNS VLGTATGIAA AAGGGEAGGA  2280
AGAGRVVATG TTASDGGGDA RAHAAAGAGS GAGAGGGAGA GPGIDTPMDP WSRFMASCGS  2340
PPPPPSQSNS ATYRSERSLS AFRPYGLGSG AGGGGSGRAC GPRSAVGTTA AVATTTADEE  2400
RPAGGGADGG CDLGEVAAAV AHAGCGGTVA AACTSSAAGN GGGAAAASAP KPQDDAQPTT  2460
AEGIAVACPT TTAAGHPRSV AAAVALAEAP RDRGSEVVSE QAADEEAADV AASCGRAVDI  2520
SAGEAAVASA PLPAAAAGST AAAMETDLPG PSTLQLPPLP PPPPPPTAPR AASFPSLGNG  2580
APPETVRLFG RTVTKPAPLA TAGAMPPAPP LQRRAQLLPA AAPSPAPAPP TAAAAPAAAK  2640
QMHQGPHHPL VGAPWLTPAA QGRASGGQNR HATAAAEASG GGGLMSPPTA TPMACAPPAV  2700
AGSRYGAHGP PAQHTPLPLA GTGADPAPPD SQGCVAVAAP LALTPLQAAS EAGSGGAANV  2760
GGGGFASVGR GTVRVGMPYG RHAPPSAAAS HWASHDPSDQ AAGPPGLQPG GASPGERWPG  2820
WRGRAAAAAP ANTPGHVSCC SQVAWRGHGR AAGGGDADPL ATPSAPEQQQ ASPAPVPLPA  2880
AEQHAADAGC SLPNGPEGAT AAAGAISGAA PSTADAVAAV VGVPAAAAGV AGAGGEDPAA  2940
AGPAWGKEQD RMVLRETFLL GAGPATWEAI AARLGGGWGV EAVERRAGQL MQQAMALM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	348	357	GGGGRVMGGG
2	349	358	GGGGRVMGGG
3	350	359	GGGGRVMGGG
4	1688	1697	GGGGRVMGGG
5	1689	1698	GGGGRVMGGG
6	1690	1699	GGGGRVMGGG