PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH11103.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

AP2

Protein Properties

Length: 897aa MW: 92515.1 Da PI: 7.2684

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH11103.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35.2	3e-11	615	665	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+y+GV++++++grW+A++++ s + ++++lg + + Aa+a + ++k + PNH11103.1 615 SCYRGVTRHRRSGRWEAHLWVKS---IGRQVYLGGYEEEAHAAEAFDVVALKCK 665 79*****************43...34****88887788888877777765 PP
2	AP2	33.4	1.1e-10	711	759	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GV+ ++ +grW+++I p g +k+++lg fg + +Aa+a+++ +l+g PNH11103.1 711 AFRGVTAHP-SGRWESRIGIP---G-SKHIYLGLFGQERQAAAAYDRSLVRLRG 759 58*****.7*****8...3.6******99******9999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 897 aa Download sequence
CHLDHSLIDE VATTGAGGGG GGGCPLLANN PFDPAADAAC ASGSPLPSGA HPYPYAHHLQ 60 PPPTASLDHQ PDPTVDRLLS MGSADLCLLD RLFVPEGLDQ ALATTSAPGA GLAGSPGLNE 120 SRLQKQAQQA QTNKTAISTS TSSTPSTNNL YTIRPILILL IISSSKSSMA TPTSPTSNTL 180 TWTITTRHPP TLSACGHRRP SPLTPPAAMD HQGSPGYNGT PAEHQQHQHQ HHQQQHHQQQ 240 QQQEQPAYAT RHSTAGAGPS AALPHDGGGH AAAPWYGAAA EPQQHMPPQQ QQQLEMRQHQ 300 QRLPPQQQPG RQAHALIPQQ IELHGQLSPR PQHPYGNHDF QQAQAQALRL PQPASEPIVR 360 TQLPAAPPAD YGRQRQTSAM SVISDGGVVL LDLLAYGGDA GGTADMPCAR GGGGGLYGGG 420 GVDTEVHGAT MALTVNWDDD GGGSINGSHA RMPAATAAAA ASFGGSGDGR LFSSGGGGGG 480 MGDGGMPGPG LALPARAPRR RHLRVHTRTG LNGVREDGGK TSLPNGRSAQ GFRDDALAAA 540 DVGATAIGGG AAAIQAATAR TRAPKRNATF MALAPFSGSG GGEADASVEA PTGTVAVEEG 600 AAAAKEHDGA AQRSSCYRGV TRHRRSGRWE AHLWVKSIGR QVYLGGYEEE AHAAEAFDVV 660 ALKCKGPRAV RTNFPLPRYL GLLAALEAVS LDELIMAVRR QSQGFSRGSS AFRGVTAHPS 720 GRWESRIGIP GSKHIYLGLF GQERQAAAAY DRSLVRLRGA AAATNFPMGE YRRELAEYHA 780 VQQASTARGL LLLDAHMLPL TRPGPELEKW VKAGFRAFPH LAAEAAATDP EADMLEASAA 840 VKAAVGPAAD IGAGASIDTC SLSPMEAVLA IAAAAAAAAA ATMAASAEVA AAGDAAV

Sequence ? help Back to Top

Protein Sequence Length: 897 aa Download sequence

CHLDHSLIDE VATTGAGGGG GGGCPLLANN PFDPAADAAC ASGSPLPSGA HPYPYAHHLQ  60
PPPTASLDHQ PDPTVDRLLS MGSADLCLLD RLFVPEGLDQ ALATTSAPGA GLAGSPGLNE  120
SRLQKQAQQA QTNKTAISTS TSSTPSTNNL YTIRPILILL IISSSKSSMA TPTSPTSNTL  180
TWTITTRHPP TLSACGHRRP SPLTPPAAMD HQGSPGYNGT PAEHQQHQHQ HHQQQHHQQQ  240
QQQEQPAYAT RHSTAGAGPS AALPHDGGGH AAAPWYGAAA EPQQHMPPQQ QQQLEMRQHQ  300
QRLPPQQQPG RQAHALIPQQ IELHGQLSPR PQHPYGNHDF QQAQAQALRL PQPASEPIVR  360
TQLPAAPPAD YGRQRQTSAM SVISDGGVVL LDLLAYGGDA GGTADMPCAR GGGGGLYGGG  420
GVDTEVHGAT MALTVNWDDD GGGSINGSHA RMPAATAAAA ASFGGSGDGR LFSSGGGGGG  480
MGDGGMPGPG LALPARAPRR RHLRVHTRTG LNGVREDGGK TSLPNGRSAQ GFRDDALAAA  540
DVGATAIGGG AAAIQAATAR TRAPKRNATF MALAPFSGSG GGEADASVEA PTGTVAVEEG  600
AAAAKEHDGA AQRSSCYRGV TRHRRSGRWE AHLWVKSIGR QVYLGGYEEE AHAAEAFDVV  660
ALKCKGPRAV RTNFPLPRYL GLLAALEAVS LDELIMAVRR QSQGFSRGSS AFRGVTAHPS  720
GRWESRIGIP GSKHIYLGLF GQERQAAAAY DRSLVRLRGA AAATNFPMGE YRRELAEYHA  780
VQQASTARGL LLLDAHMLPL TRPGPELEKW VKAGFRAFPH LAAEAAATDP EADMLEASAA  840
VKAAVGPAAD IGAGASIDTC SLSPMEAVLA IAAAAAAAAA ATMAASAEVA AAGDAAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20840.1	3e-32	AP2 family protein