PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH10997.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

M-type_MADS

Protein Properties

Length: 780aa MW: 77273.3 Da PI: 6.0785

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH10997.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.4	5.1e-15	20	49	13	42
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifss 42 f++R++g+lKKA ELSvLCd +va+i+f++ PNH10997.1 20 FARRKQGLLKKAMELSVLCDCDVALIVFGP 49 89**************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 780 aa Download sequence
MFSESLMKKA VRQPAGGAMF ARRKQGLLKK AMELSVLCDC DVALIVFGPG SGSGPGGQRL 60 YQYSSIEMDE LLERYASAVL EPHERRRNGE LLRHYYELSP DEDDDVGNDG MGDGDVMGDG 120 TSTSAAARAA AAATMAAVDR IITGGGGRRD SRDDGLNPLK RMRAPSPGLG GLGGGGGAGL 180 PSGAAADGGL PGGGGLGGGG PFGAAAPLRR VPMMGGGGLG PTVPLEGIKA AGFLDKRNYP 240 VSPRSEKAYE EVTQELERLQ ELRRGSAQTM PPGLQPLSAT SGAPGSFAFA AQQHQQHLAH 300 LLQQHQQQHQ QQGGGGKRFK PLSIMVPDNQ AHPILHSSAA PHASNGAGMP SSSAAAARAH 360 DLRLAGSGVH LAGQPHAHGP NGLPQHHQQQ LLGLPPRPPG AAQLRAQGQG GLQQHPQGAG 420 AAGEAGGRQG LGPSGAEDGS SGAAGGGSGP APMDTDGGGA SFAFDRRSQG GGDDAAGSFA 480 AFASLPRSSL DGSTANLLSM PSPLPHGGAH GLFGSLDGGP LSMRTSNNGM LGLERGASMG 540 MGLLESPGPM ALDAALRGLA PMDVLDWPSS SPSRSGANSD AGGEAGGFAS DDGDGGTMMD 600 GLVVQGTALS KLPPEALEAA IGPSPDEGGG GGGTPLPVRG GSASTTAFAS ATSAAAAAAA 660 FGHPHKAPGT PTDARPSPVP RTLGAAGGDG AAGPSGAPAG EGGQPQQQEQ ARAGAGPAPP 720 HPHGFSYQEA FEAATSGLST ELSFNELHVG GSALAAAAAA SVAAQQQQQR EAQEEGGGSS

Sequence ? help Back to Top

Protein Sequence Length: 780 aa Download sequence

MFSESLMKKA VRQPAGGAMF ARRKQGLLKK AMELSVLCDC DVALIVFGPG SGSGPGGQRL  60
YQYSSIEMDE LLERYASAVL EPHERRRNGE LLRHYYELSP DEDDDVGNDG MGDGDVMGDG  120
TSTSAAARAA AAATMAAVDR IITGGGGRRD SRDDGLNPLK RMRAPSPGLG GLGGGGGAGL  180
PSGAAADGGL PGGGGLGGGG PFGAAAPLRR VPMMGGGGLG PTVPLEGIKA AGFLDKRNYP  240
VSPRSEKAYE EVTQELERLQ ELRRGSAQTM PPGLQPLSAT SGAPGSFAFA AQQHQQHLAH  300
LLQQHQQQHQ QQGGGGKRFK PLSIMVPDNQ AHPILHSSAA PHASNGAGMP SSSAAAARAH  360
DLRLAGSGVH LAGQPHAHGP NGLPQHHQQQ LLGLPPRPPG AAQLRAQGQG GLQQHPQGAG  420
AAGEAGGRQG LGPSGAEDGS SGAAGGGSGP APMDTDGGGA SFAFDRRSQG GGDDAAGSFA  480
AFASLPRSSL DGSTANLLSM PSPLPHGGAH GLFGSLDGGP LSMRTSNNGM LGLERGASMG  540
MGLLESPGPM ALDAALRGLA PMDVLDWPSS SPSRSGANSD AGGEAGGFAS DDGDGGTMMD  600
GLVVQGTALS KLPPEALEAA IGPSPDEGGG GGGTPLPVRG GSASTTAFAS ATSAAAAAAA  660
FGHPHKAPGT PTDARPSPVP RTLGAAGGDG AAGPSGAPAG EGGQPQQQEQ ARAGAGPAPP  720
HPHGFSYQEA FEAATSGLST ELSFNELHVG GSALAAAAAA SVAAQQQQQR EAQEEGGGSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62165.4	4e-11	MIKC_MADS family protein