PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH10781.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

MYB

Protein Properties

Length: 512aa MW: 53604.8 Da PI: 9.3301

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH10781.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26	2.1e-08	14	55	15	48
HHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 15 avkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48 +vk++G g+W+ Iar ++ +gR +kqc++rw+ +l PNH10781.1 14 LVKKFGEGNWSPIARALNeatgktetQGRIGKQCRERWNHHL 55 69************************************9886 PP
2	Myb_DNA-binding	56.9	4.9e-18	61	103	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ + vda+k+lG++ W+ Iar+++ gR+++ +k++w+ PNH10781.1 61 KDPWTPEEEGQVVDAHKRLGNR-WSDIARCIP-GRSENAVKNHWN 103 689*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MNLAQLHRGG SHPLVKKFGE GNWSPIARAL NEATGKTETQ GRIGKQCRER WNHHLSPGLR 60 KDPWTPEEEG QVVDAHKRLG NRWSDIARCI PGRSENAVKN HWNATLRKRI GPDNPAGPLR 120 LYLDTLNLAV APRRRGAGGG KRRRSSGTYG ESCFSIFHPA AANDDAALTA AAAAAAPVAR 180 AWTPPNLFDA PHWQLDFGCP NSPLLHGGGG GGNGGAGGAA EAAGYGGGAR DSRAVRAAAT 240 AAAATAALAD AGWRGAAAAP VAHTAAAAAA VAVDSSVSSA GSLPQRELQR LLHGGGGSRG 300 DGEVLGPASA AQQQRQQQQH QQQQHQQHPH ILKRESSFGG CGPLPPPQHH QQPHQHECAY 360 EVTTPASMTP GARPFGGSGD ANAAGAQQPA PAMPWASQPP LPYTLGAHPQ GPVVALPSYM 420 WQGSTSQHAL YGAPQQQLPP LQQRYDVPPH YQLMEQQQPL PMQLLGGPPP YAFMQGFPPA 480 PPLPPPTQQP QQPSYGLPGL CTTAGGVEYV GA

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MNLAQLHRGG SHPLVKKFGE GNWSPIARAL NEATGKTETQ GRIGKQCRER WNHHLSPGLR  60
KDPWTPEEEG QVVDAHKRLG NRWSDIARCI PGRSENAVKN HWNATLRKRI GPDNPAGPLR  120
LYLDTLNLAV APRRRGAGGG KRRRSSGTYG ESCFSIFHPA AANDDAALTA AAAAAAPVAR  180
AWTPPNLFDA PHWQLDFGCP NSPLLHGGGG GGNGGAGGAA EAAGYGGGAR DSRAVRAAAT  240
AAAATAALAD AGWRGAAAAP VAHTAAAAAA VAVDSSVSSA GSLPQRELQR LLHGGGGSRG  300
DGEVLGPASA AQQQRQQQQH QQQQHQQHPH ILKRESSFGG CGPLPPPQHH QQPHQHECAY  360
EVTTPASMTP GARPFGGSGD ANAAGAQQPA PAMPWASQPP LPYTLGAHPQ GPVVALPSYM  420
WQGSTSQHAL YGAPQQQLPP LQQRYDVPPH YQLMEQQQPL PMQLLGGPPP YAFMQGFPPA  480
PPLPPPTQQP QQPSYGLPGL CTTAGGVEYV GA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	6e-31	MYB family protein