PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH10713.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

C3H

Protein Properties

Length: 811aa MW: 82136.9 Da PI: 7.9002

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH10713.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20	1.2e-06	241	260	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+++ + G+C +Gd C++aHg PNH10713.1 241 CPDYKQ-GFCIRGDVCPYAHG 260 ****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 811 aa Download sequence
METEVIGHYL VPAAGRPAQP LLHESTSLFQ AVVSDRLSKV ESAVEADAAK LNQFFLVLHW 60 ASDVKGACPE PTAEPLDAAA AAAAKASVMV KQRSLLMIAA HAGSLRVLAY LLARGAEPGR 120 KSPDGLTAYD MAVDGETSSS PTALAMMRDA DSNPSSSTRS SSNESYGTSG RQDLDSDGSA 180 YSTMDLTRPE YSTDDFRMFN FKVLRCSKRH AHDWRACPFA HPTENARRRD PREFKYCALA 240 CPDYKQGFCI RGDVCPYAHG VFECWLHPSR YRTQLCKDGS NCHRPVCFFA HSLPELRAPT 300 FTWVPTQADL TRPAAYSNST NNSGAGGNGN NGGHGMGAVL PPGAVASAVA ALALGAVGDG 360 VITIGASAAA EARALMSHSS SGIPATGSSS DGCCATATCS SPRALSIGGS GNGGNGGSGS 420 LSGGNGSSMC GGNGSSMCGG NGNGSLTGSS MCGGNGNGSH SSSNGAIGSP SPSGSVGSRE 480 GGSSSSCNSG CGGISTSNIT TVIVNDNGSK VCHTTGGGSS PGASAAAAAA AAKLSLNLTQ 540 PNAAAGVLGF TAPRMSNAFA RRHGLNPKDN PMINLQKIAL QSHQQQQQQS QQPQQMQMQS 600 GNGLGGASSL NGFQQDAPSL RAHHAPAGTG SGSLHAGRGG IANGNGGQQR MHAAAAAAAV 660 AASSHAGFGP LGYAASAAPF CSMQSAGHPL SAGAADPAML AAQLAALNLQ QQRQSHHSHH 720 HHHHHHNQLG LTFSGLNGLG GLGGLGSMSM TSGAAAAAAA AAAMPYMTVA GQHQALMQHH 780 SNMYGSASNG MYDHSQQHHL MAAMSGAQAE V

Sequence ? help Back to Top

Protein Sequence Length: 811 aa Download sequence

METEVIGHYL VPAAGRPAQP LLHESTSLFQ AVVSDRLSKV ESAVEADAAK LNQFFLVLHW  60
ASDVKGACPE PTAEPLDAAA AAAAKASVMV KQRSLLMIAA HAGSLRVLAY LLARGAEPGR  120
KSPDGLTAYD MAVDGETSSS PTALAMMRDA DSNPSSSTRS SSNESYGTSG RQDLDSDGSA  180
YSTMDLTRPE YSTDDFRMFN FKVLRCSKRH AHDWRACPFA HPTENARRRD PREFKYCALA  240
CPDYKQGFCI RGDVCPYAHG VFECWLHPSR YRTQLCKDGS NCHRPVCFFA HSLPELRAPT  300
FTWVPTQADL TRPAAYSNST NNSGAGGNGN NGGHGMGAVL PPGAVASAVA ALALGAVGDG  360
VITIGASAAA EARALMSHSS SGIPATGSSS DGCCATATCS SPRALSIGGS GNGGNGGSGS  420
LSGGNGSSMC GGNGSSMCGG NGNGSLTGSS MCGGNGNGSH SSSNGAIGSP SPSGSVGSRE  480
GGSSSSCNSG CGGISTSNIT TVIVNDNGSK VCHTTGGGSS PGASAAAAAA AAKLSLNLTQ  540
PNAAAGVLGF TAPRMSNAFA RRHGLNPKDN PMINLQKIAL QSHQQQQQQS QQPQQMQMQS  600
GNGLGGASSL NGFQQDAPSL RAHHAPAGTG SGSLHAGRGG IANGNGGQQR MHAAAAAAAV  660
AASSHAGFGP LGYAASAAPF CSMQSAGHPL SAGAADPAML AAQLAALNLQ QQRQSHHSHH  720
HHHHHHNQLG LTFSGLNGLG GLGGLGSMSM TSGAAAAAAA AAAMPYMTVA GQHQALMQHH  780
SNMYGSASNG MYDHSQQHHL MAAMSGAQAE V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12850.1	2e-48	C3H family protein