PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PNH10713.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
Family C3H
Protein Properties Length: 811aa    MW: 82136.9 Da    PI: 7.9002
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PNH10713.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06241260626
                 -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                 C+++ + G+C +Gd C++aHg
  PNH10713.1 241 CPDYKQ-GFCIRGDVCPYAHG 260
                 ******.*************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    
METEVIGHYL VPAAGRPAQP LLHESTSLFQ AVVSDRLSKV ESAVEADAAK LNQFFLVLHW  60
ASDVKGACPE PTAEPLDAAA AAAAKASVMV KQRSLLMIAA HAGSLRVLAY LLARGAEPGR  120
KSPDGLTAYD MAVDGETSSS PTALAMMRDA DSNPSSSTRS SSNESYGTSG RQDLDSDGSA  180
YSTMDLTRPE YSTDDFRMFN FKVLRCSKRH AHDWRACPFA HPTENARRRD PREFKYCALA  240
CPDYKQGFCI RGDVCPYAHG VFECWLHPSR YRTQLCKDGS NCHRPVCFFA HSLPELRAPT  300
FTWVPTQADL TRPAAYSNST NNSGAGGNGN NGGHGMGAVL PPGAVASAVA ALALGAVGDG  360
VITIGASAAA EARALMSHSS SGIPATGSSS DGCCATATCS SPRALSIGGS GNGGNGGSGS  420
LSGGNGSSMC GGNGSSMCGG NGNGSLTGSS MCGGNGNGSH SSSNGAIGSP SPSGSVGSRE  480
GGSSSSCNSG CGGISTSNIT TVIVNDNGSK VCHTTGGGSS PGASAAAAAA AAKLSLNLTQ  540
PNAAAGVLGF TAPRMSNAFA RRHGLNPKDN PMINLQKIAL QSHQQQQQQS QQPQQMQMQS  600
GNGLGGASSL NGFQQDAPSL RAHHAPAGTG SGSLHAGRGG IANGNGGQQR MHAAAAAAAV  660
AASSHAGFGP LGYAASAAPF CSMQSAGHPL SAGAADPAML AAQLAALNLQ QQRQSHHSHH  720
HHHHHHNQLG LTFSGLNGLG GLGGLGSMSM TSGAAAAAAA AAAMPYMTVA GQHQALMQHH  780
SNMYGSASNG MYDHSQQHHL MAAMSGAQAE V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.12e-48C3H family protein