PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PNH10560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
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Family | C3H | ||||||||
Protein Properties | Length: 181aa MW: 19308.1 Da PI: 8.4659 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.3 | 1.9e-11 | 42 | 65 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+ C +++ G C++G+rC+FaHg PNH10560.1 42 KTKVCTRWLM-GDCRFGARCNFAHG 65 89********.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence |
MDGAFPNRRG PNEPFPQQQG EGGGPEGGPK PRGFRGTAEN AKTKVCTRWL MGDCRFGARC 60 NFAHGDTELR KLPDRPGGRG AGRGGFGQFP GSGRGGYGGR GPGGFQGPGY EAVGYEAVGY 120 GQPQGGPSED VWAAQGFPVQ GPNGWVMYRT RDTGEPYYHN HHNNETSWDR PGDWPIGAPT 180 L |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 7e-09 | C3H family protein |