PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH10332.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

YABBY

Protein Properties

Length: 2524aa MW: 255399 Da PI: 7.4374

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH10332.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	42.7	2e-13	737	789	110	162
YABBY 110 prvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162 p++ + +PP kr r Ps yn f+++e++r++a+ P + r+af aa W+ PNH10332.1 737 PQQLQLQQPPAKRSREPSQYNLFVRDEVKRLRAETPGLDNRDAFRQAASKWSV 789 6677899********************************************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 2524 aa Download sequence
MDSNLCGTEQ QQQQQHHQQQ QRLTEPPTSH NPEHDQVWGE RRLENQQQQQ QCGPQEQAAG 60 AAAAADWGRG ASSSSTGPLA EPAGGLAVAA PQETQAASAV PPPEGEAMPG GPLHSVPLPP 120 LPPHLAQPTP GAVPHPCHHG YHHQPQLQRV QPSLAQGFPA PSPVPYHHTP PPYHQQQQQQ 180 QYHQQPYPPQ PYPPHQTHPP HPCQQQPYPQ QQQQQQQQQQ QQQQQQQAQQ QVQQHQQHQQ 240 QVQQHQQQVP QQQLQQQERG IAATVQVTCE AMDCGVLLEA NIPVEHPPEE PFLVRCGNCR 300 RLLEVRLTRV AVDPAPQPQP GGVGRERGPG GASRPAEGGG GEQQHQQQQQ QQKPQQHHHL 360 HPGPAHAPAA LAAWHAAPAA NPAAANPVLP PGYYPPHSTQ PPPALSPQRQ PGPHPWPAEP 420 QHAPPPWGQA PPVSGPRGGP QPQPPQQTPQ PQQPPPQPRQ QPPRPHGGSL GASGISGASS 480 ATGPPGSLPL PSAAGAAGTA QGEGQQRPLL SPVASWPQPQ ARGAGGGGGG EAGGGGGAGG 540 AAGMMQESES VPCGGQGGDV TAGGMGGGGG QYALPQTAVQ YAAQPGGSDL GGGYGTPYGA 600 PGPATGHYWQ QLPAPSNVQQ QQQQQQQPGP QSLLQSLSGP YGGLGAGVLP AHSGGGAGVP 660 YGLASDLPYG YGQGPGGSSA WPAAEPPLYG SAAGALLQQE ALLTGYPGGG VAGFTACAVI 720 PGAGTGRPPL QPEGPAPQQL QLQQPPAKRS REPSQYNLFV RDEVKRLRAE TPGLDNRDAF 780 RQAASKWSVL QSSRRDRSSG GGSALSGPRG ASTVSATTSL GGHAGAQQQV SSGARAASGA 840 ADALGGGGGH GGGGGGGNGE GEGAPGGPLA SGLLPLPPLP PLPVQEAGGG KAGTQGGEKE 900 AEEAHSMDLS SSATSHLGLA PRGPRQRQHS TAAAPAAASG AATGGGNGDG GGGHAGPPAS 960 PAGAAAAAAA GVTALPAVSS FSSLLADACG AQPLAAAEAV DAEPAAAPYT AAVRPAAGEQ 1020 QQHLNQQRQQ QQRGVTEGMG SAAFRNDDML MQLSGGGNGP GTNAGGAALA PTAAAGGASA 1080 DSIMPASGSR SRLDAASMHA PPPTSAWGSG HEQQHHHHQQ QQQQQQQQQQ QQQQQHPNHP 1140 QQQQQHLQHQ QHLQLQHPQP QQQQHPQQQH QHLQLQHQQQ QQHQQQPHPG APWAAAASGA 1200 ATAAVTAAAA ALGRAAGFSG ARTTWGPQAP ETGAAAGRPP AGVAFPGLTH PAGAGAGPQG 1260 PWGPGLPAPA ANVGSFHEQQ RLAPPPPPQQ QQQQQQQLHE QRYYQHQQDQ RQHQQQQHHQ 1320 QEQEQVARVA GSGQMLASQR YGSGGSGGGA GGGGGRASSG GGQLGSGGGG SGRRGSAAAA 1380 GSVGSAGGGA RAQGGPAPAA RRGLLAGVLA ELQQHQQHQQ HQQHQQHQQH QQHQQHQQHQ 1440 QHQQHQHLQQ NQQQHHHQQD HHQQLQQLQQ HQQHNVRQVQ SGGGSEVGGA SGSRRSSSLA 1500 GMLHGGLGSG GGSGAGGAPP HRPWRPPHEG AAPSGPPPAG SQQRRGGASA QRPAAAEWSV 1560 LQSSRRDRSS GGGSALSGPR GASTVSATTS LGGHAGAQQQ VSSGARDASG AADALGGGGG 1620 HGGGGGGGNG EGEGAPGGPL ASGLLPLLPL PPLPVQEAGG GKAGTQGGEK EAEEAHSMDL 1680 SSSATSHLGL APRGPRQRQH STAAAPAAAS GAATGGGNGD GGGGHAGPPA SPAGAAAAAA 1740 AGVTALPAVS SFSSLLADAC GAQPLAAAEA VDAEPAAAPY TAAVRPAAGE QQQHLNQQRQ 1800 QQQRGVTEGM GSAAFRNDDM LMQLSGGGNG PGTNAGGAAL APTAAAGGAS ADSIMPASGS 1860 RSRLDAASMH APPPTSAWGS GHEQQHHHHQ QQQQQQQQQQ QQQHPNHPQQ QQQHLQHQQH 1920 LQLQHPQPQQ QQHPQQQHQH LQLQHQQQQQ HQQQPHPGAP WAAAASGAAT AAVTAAAAAL 1980 GRAAGFSGAR TTWGPQAPET GAAAGRPPAG VAFPGLTHPA GAGAGPQGPW GPGLPAPAAN 2040 VGSFHEQQRL APPPPPQQQQ QQQQQLHEQR YYQHQQDQRQ HQQQQHHQQE QEQVARVAGS 2100 GQMLASQRYG SGGSGGGAGG GGGRASSGGG QLGSGGGGSG RRGSAAAAGS VGSAGGGARA 2160 QGGPAPAARR GLLAGVLAEL QQHQQHQQHQ QHQQHQQHQQ HQQHQQHQQH QQHQHLQQNQ 2220 QQHHHQQDHH QQLQQLQQHQ QHNVRQVQSG GGSEVGGASG SRRSSSLAGM LHGGLGSGGG 2280 SGAGGAPPHR PWRPPHEGAA PSGPPPAGSQ QRRGGASAQR PAAAEAGGGV ASAAAAAHSP 2340 LVIADLSQLL SIVSNLPMMA AAPLLPHPPP ALRRAAPAAA AAAAWLPPPP GGLQGLDSGC 2400 MVDVAGGGAE RQESLGWQWG DWTWGSGSAG GSQGGSEAAV QDAMEAAAGD QAPQAGAGAS 2460 QRLADGAAAP PPEAAAAAVT AAGRGGDRGG GASAPGGALA SELSFSPFSA LEAIQELHPD 2520 ERED

Sequence ? help Back to Top

Protein Sequence Length: 2524 aa Download sequence

MDSNLCGTEQ QQQQQHHQQQ QRLTEPPTSH NPEHDQVWGE RRLENQQQQQ QCGPQEQAAG  60
AAAAADWGRG ASSSSTGPLA EPAGGLAVAA PQETQAASAV PPPEGEAMPG GPLHSVPLPP  120
LPPHLAQPTP GAVPHPCHHG YHHQPQLQRV QPSLAQGFPA PSPVPYHHTP PPYHQQQQQQ  180
QYHQQPYPPQ PYPPHQTHPP HPCQQQPYPQ QQQQQQQQQQ QQQQQQQAQQ QVQQHQQHQQ  240
QVQQHQQQVP QQQLQQQERG IAATVQVTCE AMDCGVLLEA NIPVEHPPEE PFLVRCGNCR  300
RLLEVRLTRV AVDPAPQPQP GGVGRERGPG GASRPAEGGG GEQQHQQQQQ QQKPQQHHHL  360
HPGPAHAPAA LAAWHAAPAA NPAAANPVLP PGYYPPHSTQ PPPALSPQRQ PGPHPWPAEP  420
QHAPPPWGQA PPVSGPRGGP QPQPPQQTPQ PQQPPPQPRQ QPPRPHGGSL GASGISGASS  480
ATGPPGSLPL PSAAGAAGTA QGEGQQRPLL SPVASWPQPQ ARGAGGGGGG EAGGGGGAGG  540
AAGMMQESES VPCGGQGGDV TAGGMGGGGG QYALPQTAVQ YAAQPGGSDL GGGYGTPYGA  600
PGPATGHYWQ QLPAPSNVQQ QQQQQQQPGP QSLLQSLSGP YGGLGAGVLP AHSGGGAGVP  660
YGLASDLPYG YGQGPGGSSA WPAAEPPLYG SAAGALLQQE ALLTGYPGGG VAGFTACAVI  720
PGAGTGRPPL QPEGPAPQQL QLQQPPAKRS REPSQYNLFV RDEVKRLRAE TPGLDNRDAF  780
RQAASKWSVL QSSRRDRSSG GGSALSGPRG ASTVSATTSL GGHAGAQQQV SSGARAASGA  840
ADALGGGGGH GGGGGGGNGE GEGAPGGPLA SGLLPLPPLP PLPVQEAGGG KAGTQGGEKE  900
AEEAHSMDLS SSATSHLGLA PRGPRQRQHS TAAAPAAASG AATGGGNGDG GGGHAGPPAS  960
PAGAAAAAAA GVTALPAVSS FSSLLADACG AQPLAAAEAV DAEPAAAPYT AAVRPAAGEQ  1020
QQHLNQQRQQ QQRGVTEGMG SAAFRNDDML MQLSGGGNGP GTNAGGAALA PTAAAGGASA  1080
DSIMPASGSR SRLDAASMHA PPPTSAWGSG HEQQHHHHQQ QQQQQQQQQQ QQQQQHPNHP  1140
QQQQQHLQHQ QHLQLQHPQP QQQQHPQQQH QHLQLQHQQQ QQHQQQPHPG APWAAAASGA  1200
ATAAVTAAAA ALGRAAGFSG ARTTWGPQAP ETGAAAGRPP AGVAFPGLTH PAGAGAGPQG  1260
PWGPGLPAPA ANVGSFHEQQ RLAPPPPPQQ QQQQQQQLHE QRYYQHQQDQ RQHQQQQHHQ  1320
QEQEQVARVA GSGQMLASQR YGSGGSGGGA GGGGGRASSG GGQLGSGGGG SGRRGSAAAA  1380
GSVGSAGGGA RAQGGPAPAA RRGLLAGVLA ELQQHQQHQQ HQQHQQHQQH QQHQQHQQHQ  1440
QHQQHQHLQQ NQQQHHHQQD HHQQLQQLQQ HQQHNVRQVQ SGGGSEVGGA SGSRRSSSLA  1500
GMLHGGLGSG GGSGAGGAPP HRPWRPPHEG AAPSGPPPAG SQQRRGGASA QRPAAAEWSV  1560
LQSSRRDRSS GGGSALSGPR GASTVSATTS LGGHAGAQQQ VSSGARDASG AADALGGGGG  1620
HGGGGGGGNG EGEGAPGGPL ASGLLPLLPL PPLPVQEAGG GKAGTQGGEK EAEEAHSMDL  1680
SSSATSHLGL APRGPRQRQH STAAAPAAAS GAATGGGNGD GGGGHAGPPA SPAGAAAAAA  1740
AGVTALPAVS SFSSLLADAC GAQPLAAAEA VDAEPAAAPY TAAVRPAAGE QQQHLNQQRQ  1800
QQQRGVTEGM GSAAFRNDDM LMQLSGGGNG PGTNAGGAAL APTAAAGGAS ADSIMPASGS  1860
RSRLDAASMH APPPTSAWGS GHEQQHHHHQ QQQQQQQQQQ QQQHPNHPQQ QQQHLQHQQH  1920
LQLQHPQPQQ QQHPQQQHQH LQLQHQQQQQ HQQQPHPGAP WAAAASGAAT AAVTAAAAAL  1980
GRAAGFSGAR TTWGPQAPET GAAAGRPPAG VAFPGLTHPA GAGAGPQGPW GPGLPAPAAN  2040
VGSFHEQQRL APPPPPQQQQ QQQQQLHEQR YYQHQQDQRQ HQQQQHHQQE QEQVARVAGS  2100
GQMLASQRYG SGGSGGGAGG GGGRASSGGG QLGSGGGGSG RRGSAAAAGS VGSAGGGARA  2160
QGGPAPAARR GLLAGVLAEL QQHQQHQQHQ QHQQHQQHQQ HQQHQQHQQH QQHQHLQQNQ  2220
QQHHHQQDHH QQLQQLQQHQ QHNVRQVQSG GGSEVGGASG SRRSSSLAGM LHGGLGSGGG  2280
SGAGGAPPHR PWRPPHEGAA PSGPPPAGSQ QRRGGASAQR PAAAEAGGGV ASAAAAAHSP  2340
LVIADLSQLL SIVSNLPMMA AAPLLPHPPP ALRRAAPAAA AAAAWLPPPP GGLQGLDSGC  2400
MVDVAGGGAE RQESLGWQWG DWTWGSGSAG GSQGGSEAAV QDAMEAAAGD QAPQAGAGAS  2460
QRLADGAAAP PPEAAAAAVT AAGRGGDRGG GASAPGGALA SELSFSPFSA LEAIQELHPD  2520
ERED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1352	1362	GGGGRASSGGG
2	1353	1363	GGGGRASSGGG
3	1354	1364	GGGGRASSGGG
4	2120	2130	GGGGRASSGGG
5	2121	2131	GGGGRASSGGG
6	2122	2132	GGGGRASSGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	6e-07	YABBY family protein