PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH09191.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

SBP

Protein Properties

Length: 996aa MW: 96498.7 Da PI: 7.5877

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH09191.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	78.7	8.5e-25	38	112	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +C+v gC++dl +a + h+r+++C+ h kapvv+v+gl rfCqqCsrfh +ef + r+Cr L+k n+rr+++ PNH09191.1 38 RCKVLGCTSDLLTAPKTHQRFRLCNDHLKAPVVAVDGLLSRFCQQCSRFHPTTEFAGSNRTCRAMLEK-NRRRQRA 112 6***************************************************************9986.6676665 PP

Sequence ? help Back to Top
Protein Sequence Length: 996 aa Download sequence
MSSNFGSFGD GGVPVIFTSR ADADDLGGAG RRGTVPMRCK VLGCTSDLLT APKTHQRFRL 60 CNDHLKAPVV AVDGLLSRFC QQCSRFHPTT EFAGSNRTCR AMLEKNRRRQ RAAAAGTAWG 120 GGAREGPELG MSFSRMSAPA GPAFDGGGGS DGGGSGGGAL AAGAFGAFGL VGVFAPQAGA 180 AVTSSSGAAV RLPSRAAAQA AAGAMYGTEG YSALSVAAAG NQAWQTPFAA ATAPTTATAA 240 GAALQLHPPS LCGMFSQSNP FVRASAPPTL TAAPPGVPYG SAATAPALPQ QRHLLPYHHS 300 PYAVKLESYD TSAAPPYGAV HGASPPRTFL PTDAPLLSSA SLRRAAAARQ ALRSPAHAVA 360 AGGGGGGVSG SGGSAASHPP SAVSKALWDV ALLGGAPSHL GLTAACGSGH HLLGRASSSS 420 GGVSGAAAPL WSAAYGSSDM EAAAASAVAA LGPCPVFARS SAPPAAAGAA SRLRQAEQRG 480 GSSGSGDGGE GRSSVCGSSA AAAAAADDVT ARLVGGSGPL MHRSASSGAF KRRRNTTAAG 540 EPLDRWATDP SCERLLEQAN GGGGGVGGPH GSPAGPALVA LHRDRLAATD CSVPTTPKKE 600 AALRMGALML QDSDGCGGAA AAAASAAVAA AAGAVAAAEA CAAAWQAVGS ANAGGDGGGG 660 GDAWGLYGNE PGAAAAALHD GEPYGGVPNG TGANALDSGS SAAAALAAQW QREESAAAAA 720 AAAAQVEGRV GGVAAAPPPL PPPGLMAQPD GAYGVQHAGC GAAARSVWAA SAAAGLPGCG 780 GDGGGGGGGD EHMLGSSPTG ILDWAPSRSV SDTLSVVAAT VGGGGNNGRP AWQQSCAGLG 840 STNAAAADVA AAAAGGAIPP LKREALSEPA WLHGSEAHAY AGAGVLGLGQ GHGNGGRAQH 900 WSGGWGLVAG GQQPQHQQQQ QQQQGRMHLQ QQQQQRQAYH QHHPESGHAG ARCQAVAAVA 960 PGLGSSRAVG DETEEQLLLL LGDILGGGGG GACDML

Sequence ? help Back to Top

Protein Sequence Length: 996 aa Download sequence

MSSNFGSFGD GGVPVIFTSR ADADDLGGAG RRGTVPMRCK VLGCTSDLLT APKTHQRFRL  60
CNDHLKAPVV AVDGLLSRFC QQCSRFHPTT EFAGSNRTCR AMLEKNRRRQ RAAAAGTAWG  120
GGAREGPELG MSFSRMSAPA GPAFDGGGGS DGGGSGGGAL AAGAFGAFGL VGVFAPQAGA  180
AVTSSSGAAV RLPSRAAAQA AAGAMYGTEG YSALSVAAAG NQAWQTPFAA ATAPTTATAA  240
GAALQLHPPS LCGMFSQSNP FVRASAPPTL TAAPPGVPYG SAATAPALPQ QRHLLPYHHS  300
PYAVKLESYD TSAAPPYGAV HGASPPRTFL PTDAPLLSSA SLRRAAAARQ ALRSPAHAVA  360
AGGGGGGVSG SGGSAASHPP SAVSKALWDV ALLGGAPSHL GLTAACGSGH HLLGRASSSS  420
GGVSGAAAPL WSAAYGSSDM EAAAASAVAA LGPCPVFARS SAPPAAAGAA SRLRQAEQRG  480
GSSGSGDGGE GRSSVCGSSA AAAAAADDVT ARLVGGSGPL MHRSASSGAF KRRRNTTAAG  540
EPLDRWATDP SCERLLEQAN GGGGGVGGPH GSPAGPALVA LHRDRLAATD CSVPTTPKKE  600
AALRMGALML QDSDGCGGAA AAAASAAVAA AAGAVAAAEA CAAAWQAVGS ANAGGDGGGG  660
GDAWGLYGNE PGAAAAALHD GEPYGGVPNG TGANALDSGS SAAAALAAQW QREESAAAAA  720
AAAAQVEGRV GGVAAAPPPL PPPGLMAQPD GAYGVQHAGC GAAARSVWAA SAAAGLPGCG  780
GDGGGGGGGD EHMLGSSPTG ILDWAPSRSV SDTLSVVAAT VGGGGNNGRP AWQQSCAGLG  840
STNAAAADVA AAAAGGAIPP LKREALSEPA WLHGSEAHAY AGAGVLGLGQ GHGNGGRAQH  900
WSGGWGLVAG GQQPQHQQQQ QQQQGRMHLQ QQQQQRQAYH QHHPESGHAG ARCQAVAAVA  960
PGLGSSRAVG DETEEQLLLL LGDILGGGGG GACDML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	1e-17	SBP family protein