PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH09005.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

SBP

Protein Properties

Length: 1387aa MW: 140853 Da PI: 6.0492

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH09005.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	83.3	3.1e-26	117	193	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +C v+gC a l+ +k+y+ r ++Cevh a++++v+g+ rfCqqC+rf + ef +k+sC +rL+k n+r r+k+ PNH09005.1 117 VCVVDGCGASLAGLKRYFTRLRICEVHLSAQAIVVDGVVSRFCQQCGRFQFIGEFTGKKKSCTERLDKVNARHREKT 193 6***********************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1387 aa Download sequence
MAGRRGRTVA EMESTEDAWA PSDYSWDGNA MRARKRAHMN VAVAGAFGRG IGAERGAHPG 60 LWAAADPAWR EESAALAPFA IIPPVVKLDA DEHLAPRFGA LPVYHSSRKL EGEVPMVCVV 120 DGCGASLAGL KRYFTRLRIC EVHLSAQAIV VDGVVSRFCQ QCGRFQFIGE FTGKKKSCTE 180 RLDKVNARHR EKTMTKRPRR PEPQPHWHEP PPSAWESGAG PRDGLAAAMD LAASLPLPLP 240 HLGGGAASAG PALLKLQPPL QPLSAGPSTP PPLAPPAAVA AAVSGSSASY GGGGVGGGAG 300 QPMEGATSVC AAFSGGSPVA PPAMAMASSR TSSLPHVPAA AASPPALSPP DGGAAAPGAD 360 GADADTCAVR PLRRLVSTSG AGVVWYSTRL WSPPPPTEAP PTAPPQPPLS GMNSAVSAAA 420 TAAAPPASPW NVVTTSIVVR PGPDGAPLAS AAPTPDDVRR ALGAAHCELY QPALALRGAP 480 SDAPPPPQQR GQAAAAPRIR AVHSAASLAA IVGGGGGARP VTSGYRSGSP ASPATSANLG 540 PGGGGGGPVA AAAGSGGAGA AAPCESAADA CSSGAELSGS PQRHSNDGGS AVHHAAHSGS 600 GVPGSGGSGS GDAGGHGGLA VYGTGISRAG GGGGEVTQVA ARISSMLAEL GPLVAHVQQL 660 TRGSAAGSPT TQGSAPPLQA TAGGGPAGGR AQQGSPEVAA AAAGVSAATG DVGGRVQERQ 720 GSAPLPACVA DSAVELMRRA ADLASVLGGG GGGAGGGGKG AGREVEVGLG VNGFGGAARG 780 SYGAPPSRPA PAQYQPAPQH PQQQQRQQQV QQHQVQPQQL LLQPQGGRQQ QQPPKELPWQ 840 QQNQSQRLAA PQPAPYGNGA AHLYEPYGNG HAAPYALQSY GRPAAAAQAV YVRQQPAQPW 900 PVHMQQYTSY GPAQQQQQQL MMSAAQQHSY GVSRHSPLSP PMQLQQPMHY GPTPAYDRPP 960 PHNHYHNPQD PPPYANGDGG VYGNGYVSAA QQQQQQPLPY GYAPDFPADD NGEDDNMLLA 1020 SLLEDLSSEA DPLAVYLEEQ ARGRGVAVAV HQAVAVHRRC VAEVPYGSVA TAGAVWPAAD 1080 GAAAPLPYNV GGGGGGAVAM EVERVSIKAM SMHPHELPSN LRSGLGRWLA HGGAEAVQAT 1140 LRPGCLQLVV DVRRPATHAG GDLASLLLPA DEPEQAAADV FRFMGQRLRD TYVQVGRRVL 1200 TIRVGEDPRV VGWEEAAEDG GLGGAKYPEL VGCSAAAEEG VEERQLEASE GEKKTVGEAE 1260 VDEGEEVEKV QCVAAEDGEA AEVAAWCPPA AVRLTPGSLS LLLGRSEPLR RAVEQLVLGE 1320 GDVVAGRALE EEEGTEEGEE GWSQQGGPVE GGNGEVAAAV GEVVEAWGRM SCALLEALCE 1380 QLERQRL

Sequence ? help Back to Top

Protein Sequence Length: 1387 aa Download sequence

MAGRRGRTVA EMESTEDAWA PSDYSWDGNA MRARKRAHMN VAVAGAFGRG IGAERGAHPG  60
LWAAADPAWR EESAALAPFA IIPPVVKLDA DEHLAPRFGA LPVYHSSRKL EGEVPMVCVV  120
DGCGASLAGL KRYFTRLRIC EVHLSAQAIV VDGVVSRFCQ QCGRFQFIGE FTGKKKSCTE  180
RLDKVNARHR EKTMTKRPRR PEPQPHWHEP PPSAWESGAG PRDGLAAAMD LAASLPLPLP  240
HLGGGAASAG PALLKLQPPL QPLSAGPSTP PPLAPPAAVA AAVSGSSASY GGGGVGGGAG  300
QPMEGATSVC AAFSGGSPVA PPAMAMASSR TSSLPHVPAA AASPPALSPP DGGAAAPGAD  360
GADADTCAVR PLRRLVSTSG AGVVWYSTRL WSPPPPTEAP PTAPPQPPLS GMNSAVSAAA  420
TAAAPPASPW NVVTTSIVVR PGPDGAPLAS AAPTPDDVRR ALGAAHCELY QPALALRGAP  480
SDAPPPPQQR GQAAAAPRIR AVHSAASLAA IVGGGGGARP VTSGYRSGSP ASPATSANLG  540
PGGGGGGPVA AAAGSGGAGA AAPCESAADA CSSGAELSGS PQRHSNDGGS AVHHAAHSGS  600
GVPGSGGSGS GDAGGHGGLA VYGTGISRAG GGGGEVTQVA ARISSMLAEL GPLVAHVQQL  660
TRGSAAGSPT TQGSAPPLQA TAGGGPAGGR AQQGSPEVAA AAAGVSAATG DVGGRVQERQ  720
GSAPLPACVA DSAVELMRRA ADLASVLGGG GGGAGGGGKG AGREVEVGLG VNGFGGAARG  780
SYGAPPSRPA PAQYQPAPQH PQQQQRQQQV QQHQVQPQQL LLQPQGGRQQ QQPPKELPWQ  840
QQNQSQRLAA PQPAPYGNGA AHLYEPYGNG HAAPYALQSY GRPAAAAQAV YVRQQPAQPW  900
PVHMQQYTSY GPAQQQQQQL MMSAAQQHSY GVSRHSPLSP PMQLQQPMHY GPTPAYDRPP  960
PHNHYHNPQD PPPYANGDGG VYGNGYVSAA QQQQQQPLPY GYAPDFPADD NGEDDNMLLA  1020
SLLEDLSSEA DPLAVYLEEQ ARGRGVAVAV HQAVAVHRRC VAEVPYGSVA TAGAVWPAAD  1080
GAAAPLPYNV GGGGGGAVAM EVERVSIKAM SMHPHELPSN LRSGLGRWLA HGGAEAVQAT  1140
LRPGCLQLVV DVRRPATHAG GDLASLLLPA DEPEQAAADV FRFMGQRLRD TYVQVGRRVL  1200
TIRVGEDPRV VGWEEAAEDG GLGGAKYPEL VGCSAAAEEG VEERQLEASE GEKKTVGEAE  1260
VDEGEEVEKV QCVAAEDGEA AEVAAWCPPA AVRLTPGSLS LLLGRSEPLR RAVEQLVLGE  1320
GDVVAGRALE EEEGTEEGEE GWSQQGGPVE GGNGEVAAAV GEVVEAWGRM SCALLEALCE  1380
QLERQRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	1e-16	SBP family protein