PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH08667.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

ERF

Protein Properties

Length: 560aa MW: 55873 Da PI: 6.5107

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH08667.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.8	1.5e-19	293	343	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr+++ +g+++AeIrdp + r +lg+++taeeAa a+++a+++++g PNH08667.1 293 SKYRGVRQRP-WGKFAAEIRDPH----KgCRLWLGTYDTAEEAALAYDKAAREIRG 343 89******.******73....359**********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MLLDAKQRNN LLSLDAASLG LQLAAEASDG SSPSTSHDSQ EPAQAGAPSG TAANALQQAV 60 AMMAAGANGV PAHSLSVGLP SIAGVGAIAA AAQVASGSGA AAAPSLWMQP VGQPSLYNPH 120 GSAGAFKAPP VPGGLMPPSK RVTSNGHQFP DGDSMAAGAV LGSMEQHAAA GSLGSLGAGV 180 PALLGFSPYE PAAAAGPMGR PPLPPGASRL SDHPAAGIGC STSYKSSGSH LGPMPSGTPL 240 GASPPSLGSS PAAARGPSRR RTSSTNPLSS SVGAKASSSA PSLSIKPDKS GASKYRGVRQ 300 RPWGKFAAEI RDPHKGCRLW LGTYDTAEEA ALAYDKAARE IRGPRAVVNF PGVSHQHALQ 360 QNDDEGGQWD PLSSSLGTSP ISSGFVTGTS PLMGGSAPGR HLHHQPYHHP GVAPRSSLGT 420 RNAYGGFPGF KRDPETIAEG ESDVDMDGDD DADGMMGGMD DVGGGRHRLN VVTGVGSIHQ 480 RPSRPAAAAA VAAVTAAAAR AGLEEDDEFD MDVAAPPARR GGGGGGGVGG GKQRTAVSMD 540 VEEELAELAD ALLLLHESAC

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MLLDAKQRNN LLSLDAASLG LQLAAEASDG SSPSTSHDSQ EPAQAGAPSG TAANALQQAV  60
AMMAAGANGV PAHSLSVGLP SIAGVGAIAA AAQVASGSGA AAAPSLWMQP VGQPSLYNPH  120
GSAGAFKAPP VPGGLMPPSK RVTSNGHQFP DGDSMAAGAV LGSMEQHAAA GSLGSLGAGV  180
PALLGFSPYE PAAAAGPMGR PPLPPGASRL SDHPAAGIGC STSYKSSGSH LGPMPSGTPL  240
GASPPSLGSS PAAARGPSRR RTSSTNPLSS SVGAKASSSA PSLSIKPDKS GASKYRGVRQ  300
RPWGKFAAEI RDPHKGCRLW LGTYDTAEEA ALAYDKAARE IRGPRAVVNF PGVSHQHALQ  360
QNDDEGGQWD PLSSSLGTSP ISSGFVTGTS PLMGGSAPGR HLHHQPYHHP GVAPRSSLGT  420
RNAYGGFPGF KRDPETIAEG ESDVDMDGDD DADGMMGGMD DVGGGRHRLN VVTGVGSIHQ  480
RPSRPAAAAA VAAVTAAAAR AGLEEDDEFD MDVAAPPARR GGGGGGGVGG GKQRTAVSMD  540
VEEELAELAD ALLLLHESAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	520	532	RGGGGGGGVGGGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G43160.1	7e-18	ERF family protein