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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PNH08542.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
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| Family | AP2 | ||||||||
| Protein Properties | Length: 1604aa MW: 157553 Da PI: 6.7976 | ||||||||
| Description | AP2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | AP2 | 44.7 | 3.4e-14 | 996 | 1048 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
s+y+GV+++++ g+W+A+I + +g +++ +lg+f +++ Aa a+++a+++++g+
PNH08542.1 996 SRYRGVTRHHQPGKWEARIGRV--GG-SRYLYLGTFESEDAAAIAYDHAALRYRGA 1048
79****************9995..22.6**********99**************95 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 1604 aa Download sequence |
MQHLPGGCLP PLEAAALARA AHAEAVAASD EVAAAVAASA QAMRRLHEEL AAAAVTGIQN 60 RHLQQQQPPH HQLLRQQEDA DSPPQHPSHD QPASVASGFR GGPTAAADGA NPSRPRPAPQ 120 QERYLPSSTT SSSESNVADP VASAARQFET AAHLPKAADA AAPRCGAILA DADKAADQAM 180 TECAAAASPE AELGGERTSR VNGASPHPST SAATHADGAA AGTGNIVNGS ATTITTTTTT 240 TAVLHGASAG GHASTVRASA GTLPESGVTT PLQFSALLEG TLANPLRPPA PTAAAHSLLL 300 QDHCQGQEHG QGHDPALGHG VAPLVPPRPT SVPPFFQQPA SGSPNLPQHA HQQPPAAPGA 360 SPAAPPYRWS VDGAWCGGGA AVPLTPAPQG MHQHQQHLAH PQQALPYQPH LAHQHHHMQQ 420 QPAHHHPQQQ NPYGNVLRRY SEPTCPHGGS AGSAYCSPPG ADPHHTPPAT TPMYHQQQQQ 480 QQSSVYGAGR ALTTIPEVVD QASTHPLSFM LGTFDFMDWE PWWGHAGPGG GGPGLEPFGS 540 FLNSLEQHGG GGGGGGGEFG GTSGGGGSGG AGGLGGGGGG NGGGFGIGGD GGGFGGSGGS 600 TSGGAGGNPM QFAGVKRERP SWPGNAALLD SNYAHTQYQQ HPNQPPNHQT NRNAAFVAAF 660 NGSYAGATAV GGTAPDLWEY DGRTPTYPGG SGGGGGGTLY GEKPPHNRTA MLHGGGGVLH 720 MPGGGFGGGL CGGGAGGDGH SFPSGAPQPQ GPAAQPSPPD HRHLRPSAAS TPLGAMVPLY 780 YGGGGCGGGD GSSGGPLEGL LRPPADMRAI YTAGLLGGGG GGGGLIDVGG AAGSPNASTQ 840 SAASNLPDGG DGIGGGGRGG GGGGGALAMA MAGGREGGAA EGAAQRRRSS AGGGPMVRTK 900 NSGTSMYRGV TRLFTRVSTG SPPIIFVRLP VCGYSTEEEA ARAYDRAAIV FWGQSATMNY 960 ALEEYAHEME TLSGLTKETV VAMLRRGSTG FSRGASRYRG VTRHHQPGKW EARIGRVGGS 1020 RYLYLGTFES EDAAAIAYDH AALRYRGARA VTNFDPRQYL DAATGELLPA EALPPQVRAG 1080 LGPTSLIELE AAIQRRLAEQ TGSGEDQEDE YDERDGGDGG GNGGGGRRGQ ALPPSLPMGG 1140 GRGGGGRDGG VEGPEGGVLK AARLGAPGGS PTRIRQMSVG SGGAAAAAGG GVAAVGGGGG 1200 GGQRSQRSQR MSSHSTVSEA GGFAGLDHSG GTALQSPLYV ARNDAGFGRV PSTSGGGSYA 1260 SGPGALPPPG HHAAQPTSPS GLGPVMQSLT HIVSTLGPQG LNGGHACAVR HRSSAPGYLQ 1320 QQMPMQQQQV QQQMQQQQQV MELSALLPPG WRPPLTPFAN GSGGGGGTSH GTISAIGEAG 1380 NGDGGVYDMA DGGGGGGGAA TGAPSPLLMA AIRRTSDSGH PAGGGPAVTS GWGGGGGGGG 1440 GGASGGGGGG GCGSPLIHQR LGSTPYDDHP GALLTPEAVA WGWPSGPGGL PAAFGSSGGG 1500 GSTVTTGGGC SGVGGGGVPV LIRPLTAAVL STAAQGDAGG GLGGAAAAAA STPGGAAIVF 1560 GDGGGADMSM ETASASFFAA AAAALAGDAS PARATGDVAA AGAR |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 854 | 864 | GGGGRGGGGGG |
| 2 | 855 | 865 | GGGGRGGGGGG |
| 3 | 856 | 866 | GGGGRGGGGGG |
| 4 | 1139 | 1149 | GGGGRGGGGGG |
| 5 | 1140 | 1150 | GGGGRGGGGGG |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G54320.2 | 1e-33 | ERF family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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