PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PNH08309.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
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Family | MYB_related | ||||||||
Protein Properties | Length: 1250aa MW: 124956 Da PI: 7.47 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45 | 2.5e-14 | 28 | 72 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT +E+ ++++a k++G W++I +++ ++t+ q++s+ qk+ PNH08309.1 28 RERWTDDEHARFLEALKLYGRA-WRKIEEHVS-TKTAVQIRSHAQKF 72 78******************88.*********.************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1250 aa Download sequence |
GLAAPQPEQQ QDGLKVKTRK PYIITKQRER WTDDEHARFL EALKLYGRAW RKIEEHVSTK 60 TAVQIRSHAQ KFINKLERNK DSGLAEDGEN ISIPPPRPKR KPSRPYPRKD FAGPDNSGSG 120 VADASGVNGG SGTFTCSQGT GLNYQQQSKL SLPTQPRSTS LLPPTDVLEQ PHLPLSVSLQ 180 QPRTLSPELA VAAAAAAAIK QHQLQQIVRP QASLQSAEVT EATVAAVAAA ASAAAAAAAA 240 AVVAAAGQQV QAHLQAHPPQ GFPFFGMPPS LLAQITLQNS PLEGMSWGNS GGGGGAYGHG 300 GGDSAVHART WEHGTTYDRR PHLHHHHHHH HHHHSLERQQ QQQLALAEAT ATTTDADNPV 360 TMMMGGSAMT RGRGISGGQE SRGSDGNSAV TEREGEGEEE DLAQEDGADG DRDGDGEGEG 420 DGDGEGDLAG LDAGGEDQAA QSHRADGKRT NGVSEADADR FASYWHMLGV NDDGRLAHAH 480 TAAAAAHAQR EGHHGHDHPH GHATRSLGTR TTSSGGGGRA KAGPKAHAHK EGATSSRDQH 540 KAARDASPSY SDMVNRDAGG KPAGRGVGSS DTNGSDSALR ETRNDTGVRE AQGSNPSNHN 600 NGNGSSGNGS GSNGNGSRSQ GHGSQGNGDG SSGNGHSGGS GGEGAGGSGG DGNGYSLKAS 660 HSPHTKHHHH HHHHVHAPPH SQVYDAGRYP SHHETQDRDG NGASGIGVRP LNSEDEGNTT 720 RRGCEGSGAA TPGAGSGGEE GGGGSQGSAG GDGCGRTGCG GGSRAGSDGG PSAGPPSKAA 780 GRGSGAAALS GGGVPRGGGG GARGTASGLT GGGSLGSGGG GAPRPEGALT LVLGLDRPPV 840 GQVAGSAFSV PPPSAMVRGA SADMGKVTTL LAQLQSHASL PLFPAAAPGV PPVFAQQPLL 900 APAAAAQQAF YASAAATASA MQLGLLGVAQ LQAQAGQAAP LALAKAPAAA AASLLPGASA 960 DARAALAISL AQVAAAPLGP AAAAAVQLPR VPELAELLRL GSNAAPALAN IGNGDGGGFD 1020 AAASVAAASA YVQLMALVTG AAPALASADP FRAVAGAARG GAALGDRAPG TLGLDSAVLS 1080 ALSLPQAPRD LLMQERLVAP VATVASLPSP VMQLVQASLP PAAPLQQRLQ PVPGLGMGSA 1140 REGDRAAIPS GGLPAPLPRR RPPAAFAAAL PSEPGLQSLL KRAGAEAPRA QQLIVPTASA 1200 PSPLGGLPPR PSPPHADARR ELPSASGWKR TAGSSGDEPG GGPPNKRAHQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46830.1 | 1e-29 | MYB_related family protein |