PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PNH07637.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
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Family | SBP | ||||||||
Protein Properties | Length: 1509aa MW: 158446 Da PI: 7.4772 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 52.3 | 1.6e-16 | 414 | 484 | 2 | 75 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 Cqve C+++l e ++rh++C+ h a++v ++g+ qrfCq C r h++++f+ ++r Cr r + + r++ PNH07637.1 414 CQVEMCSQQLVE---PYERHRICQEHYWAAEVSHEGMPQRFCQLCCRLHAVDDFEADQRVCRARCNIAEQPRKR 484 ********9976...4789*********************************************9888777776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1509 aa Download sequence |
MEPAPPAAPC LPLNGAALQQ HSAPQLSAPP AQQQQQQQRG HHQNRLVVEH EPQPHEQHQQ 60 HYLHQHHLAH QGQGPHEYEY EQQMQPYSPQ GLQQQQQQRV PGHAPHLLDS MPSHPPAMPA 120 APAQGWDGRH AASRGPDVDQ QQQQPGHQQQ QQQHAGSPEV ANSCDASGSH HHHHFFSQQQ 180 HQQQQHGDDD MDDSLDDPRY GDEGDGSPQL HPHFGGRQQQ QQPLQKHGSS QQLQKHGSSQ 240 QLQKHGSSQQ LQKHGSSQQL LIQALGSQAH RAAAAAGAAA VAAAGGGTSG ARRGNAMQGG 300 GTSPHSHPSG TAISGTIGSG GGGGGGGCHF QDDAISGAAA AELRGGRDRE ADADHESRPR 360 HVLDVLGRAS PGELVVIGSQ YPRQGTAARE PAGRAVPAPP ANARNALAPA RALCQVEMCS 420 QQLVEPYERH RICQEHYWAA EVSHEGMPQR FCQLCCRLHA VDDFEADQRV CRARCNIAEQ 480 PRKRGRPDEA AAGGGGDDMA VEYGSHEAPV AIALGNGVTW TPAPQPQQKQ TQTALRDSSI 540 GSAGLAAPGG AGHHQPQAGL ALGGPMRPQC RSEGAGTPPC EGGGGGQQPQ QVGPSQQQQL 600 LQLEQLKRQL HHLQQQQQQQ QQQQQQQQQQ PAVLYDAFGD AQDASAPARP GTAPAAQQTQ 660 PHPDGAPSPG QPRPRSSPQN MLGTADPGPA QRRPGPRPMS CSSGYPQSPH PLPNLHNARA 720 DPSPPRTRHR LFHGQGQFPD LEGAAGPPLP PKGVAADGGG GGAAGAYGRP GRAGAAAAAP 780 PQPAQQQLQQ LQHAGGAPAT APPPSWPGQQ QGPQQHAGPQ QAAPGGALLH LQTARARPSS 840 APSHMSTTAG EGQEQGQQPS PLPGAMVGSA PAAAVAAASP LQQPAAGGFG VSPARPAHAY 900 GAAQGQAEAG RPHRGPQGVP PAPRQRRPQQ QQQQQQQKPP QPQQPYDPHT GDSPGQPPLR 960 QPPAAAAPLQ QPHPAAQRQQ HPGQQGPLHL RLQPDAPPHQ HQQPVAAATF GRLSGPLFPQ 1020 QPATQAPAAP APLLQRQPSA SESTIVDSVM HPHADPRSPD PHDGGGGGGR QNPAPLAAAS 1080 PPQWQPQQAL RRAPEEGQRG RAAGPAMGGL QAPPLAQVQQ QWAGGVFGGG EQQQQHQQQA 1140 AHQQQQQLLQ QQSRQQQQQQ QLLLQQQQMQ QQQIQQQQIQ QQQMQAPRPA PYEVTPQQQQ 1200 QQRAAAAGGQ PGPVAGAAAA GQAGVGPGGA AAAMQQQQQQ QAEAAQQQRQ QYLFSMSAAA 1260 HAAQLQQQQL QTGSPYAAQP HSADPASQQH PHQQQQQHHQ QQQFSGVAAR GRGTDGGAGG 1320 AQPSPPQMPQ MPPPAHHADT TRGGPPEHHH PPKEAHAGGM SGMLSLMHHQ HLGLYPQPQL 1380 QHASSAPPGG YDTSTAAAAG PPLQQHLSHH HRQPSGGGAA SLDRRLTRDL ARTLRISVNG 1440 CAASFGELPN VSNGLFDSGL ISPNTELFNI LNTGVGGDDA TGPMMDLLGG MPGESAFEDT 1500 ANTNALAKM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 2e-11 | SBP family protein |