PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH07627.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

MYB_related

Protein Properties

Length: 1003aa MW: 103673 Da PI: 9.3802

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH07627.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.7	1.5e-09	36	80	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++W++ E+++l++ + + G+ W+tIa++++ gRt+ ++k+ w++ PNH07627.1 36 RLPWSAGEELILARQHCLSGNA-WSTIAEYLP-GRTAGEVKNIWHST 80 89******************.*****.*******99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence
MGQESAHSSS EEEEESHPRL RRKGGGLAER RRRIRRLPWS AGEELILARQ HCLSGNAWST 60 IAEYLPGRTA GEVKNIWHST LRSKKLKCRS LLRAYARAVQ GREDDDSARA KAFQGALRLT 120 GGDDSLPPPL LPAAYPPPQR SACSDQHRGA PGFLLLQQQE LQAQLLQQQH QQQHAQQHQQ 180 PSFLQPLASS PTRTAAPQPR AQQRQQQDTD AAGDAGGYGG GILAARPVKQ EPCATGSSGG 240 VCGPALLATR PSSPAHPHTQ PELASYGRPP TVVPYGRPPA VPYGRPGASA PSSPTHPHPE 300 LRSSAEPAHL HSAAAPSNGR PYVATDRSPF RTAPGRGAEA LPPSPLRGGG AGSLPYNPSS 360 FGGLSYGAGS LGDAPYDRRS AVRHGTDADM VDAEADPRRG GSSGGGAPAA AATAGPLSSP 420 GGQPEGAPGS QHVQAGRPAG RSPQPAPEPL AASLAAPPAR GPRQQRWSGA GRERAGAEQG 480 RAGHSQEWAD AQRWAAEHDG GRGSGAQRER SDAGDAAWQP LGGGLSSDLQ QLLLEGLVSG 540 RADTLPLLLE LQRQQQLQEL EQLRQQQQQV WQQQQQERQG REQQRRRSPN GQQGEQHQQQ 600 QQQDLQSRRA AQQQKREWSG PIPQVGLEAA AYGSRDSRGS GGVRQQLDAW DGSSARAHDA 660 AELPPPLSIA RASSGASGGG AAGDPAAEPG LRGLPSNYIA VPLGNISDLG LGPLGLAAAR 720 ASAAGGSGHD GGGGATAAAG GGADLGILQR LLLAQLGGTG RIGSAATAGL CGVGALAAEL 780 EIELAAAAAR GAVASSKEEA AAGARGVKTA RGAEEGAREG TEAGGGGGGG GGWAGERPRA 840 RARLDAFVAD PSNLAATSTS NHMSDLLQQR RYHQPRQQQQ QRLPHAERVP YDTPHDSHGD 900 APSNGWPQRQ GLVSLGRDAA GRGGSATDPL VVLRSGKAVL EERAASGDAQ ALIEAGARRQ 960 QSPSGAGGGG GGARSSEEDV SMLDAARALS VLLAIVQQQP GQQ

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence

MGQESAHSSS EEEEESHPRL RRKGGGLAER RRRIRRLPWS AGEELILARQ HCLSGNAWST  60
IAEYLPGRTA GEVKNIWHST LRSKKLKCRS LLRAYARAVQ GREDDDSARA KAFQGALRLT  120
GGDDSLPPPL LPAAYPPPQR SACSDQHRGA PGFLLLQQQE LQAQLLQQQH QQQHAQQHQQ  180
PSFLQPLASS PTRTAAPQPR AQQRQQQDTD AAGDAGGYGG GILAARPVKQ EPCATGSSGG  240
VCGPALLATR PSSPAHPHTQ PELASYGRPP TVVPYGRPPA VPYGRPGASA PSSPTHPHPE  300
LRSSAEPAHL HSAAAPSNGR PYVATDRSPF RTAPGRGAEA LPPSPLRGGG AGSLPYNPSS  360
FGGLSYGAGS LGDAPYDRRS AVRHGTDADM VDAEADPRRG GSSGGGAPAA AATAGPLSSP  420
GGQPEGAPGS QHVQAGRPAG RSPQPAPEPL AASLAAPPAR GPRQQRWSGA GRERAGAEQG  480
RAGHSQEWAD AQRWAAEHDG GRGSGAQRER SDAGDAAWQP LGGGLSSDLQ QLLLEGLVSG  540
RADTLPLLLE LQRQQQLQEL EQLRQQQQQV WQQQQQERQG REQQRRRSPN GQQGEQHQQQ  600
QQQDLQSRRA AQQQKREWSG PIPQVGLEAA AYGSRDSRGS GGVRQQLDAW DGSSARAHDA  660
AELPPPLSIA RASSGASGGG AAGDPAAEPG LRGLPSNYIA VPLGNISDLG LGPLGLAAAR  720
ASAAGGSGHD GGGGATAAAG GGADLGILQR LLLAQLGGTG RIGSAATAGL CGVGALAAEL  780
EIELAAAAAR GAVASSKEEA AAGARGVKTA RGAEEGAREG TEAGGGGGGG GGWAGERPRA  840
RARLDAFVAD PSNLAATSTS NHMSDLLQQR RYHQPRQQQQ QRLPHAERVP YDTPHDSHGD  900
APSNGWPQRQ GLVSLGRDAA GRGGSATDPL VVLRSGKAVL EERAASGDAQ ALIEAGARRQ  960
QSPSGAGGGG GGARSSEEDV SMLDAARALS VLLAIVQQQP GQQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	21	33	RRKGGGLAERRRR
2	22	37	RKGGGLAERRRRIRRL
3	29	37	ERRRRIRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30210.1	7e-08	MYB family protein