PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PNH07524.1
Organism
Tetrabaena socialis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
Family C3H
Protein Properties Length: 290aa    MW: 32345.7 Da    PI: 8.2738
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PNH07524.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.81e-091438226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                ++++C+f+++ G C++GdrC++ H 
  PNH07524.1 14 DRVNCPFYFKIGACRHGDRCSRLHN 38
                6899********************7 PP
2zf-CCCH21.15.4e-07151174226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++ Cr + +  tC++G+ C+F+H 
  PNH07524.1 151 REATCRQYEE-NTCNRGGYCNFMHL 174
                 6789**9999.*************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPSILMVN MYQNPLLNAP  60
LGPDGLPIRV DPKAAQEHFE DFYEDVFEEL AQHGELENLN VCDNFADHMV GNVYAKFRDE  120
EAAARAVAGL QGRYYDGRPI VIEFSPVTDF REATCRQYEE NTCNRGGYCN FMHLKPIGKD  180
LRKKLFGRYK RGERERSPRR DERDHRGGGG DRGDRGGDRG RDRGRERERS RERGGGDRGG  240
ERRVRESSEE RRARIASWNT ERDGGGGGGG GGGGGYGGPP PPSYGGGGGY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219229RGRDRGRERER
2221231RGRDRGRERER
3223233RGRDRGRERER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.13e-36C3H family protein