PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH06632.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

C3H

Protein Properties

Length: 668aa MW: 67434.1 Da PI: 6.3485

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH06632.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.5e-07	88	109	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f+r+G C++Gd C+FaHg PNH06632.1 88 ACPEFRRNGCCRRGDACPFAHG 109 7********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence
MNSADANKEV VFDLDAAAFS SDDFRMFQFK VRPIGRAWAD RGGERDHRMQ VKRCPRARPH 60 DWTQCPFAHP GEKAKRRDPR KYRYSGTACP EFRRNGCCRR GDACPFAHGV FECWLHPSRY 120 RTQMCTDGSS CKRRVCFFAH TESELRKPED DPLWLQQQLH AELAAEQQVQ QQIQALKVFA 180 NILGPNSGTT GGQQAAATAT QQPNMDGAGG SSNDGLLQLL QLVEAQQQQQ QQQQQAPPPP 240 PPPPLAPSTS APANLAGLLS AVTAAAGGAS GGGGGAAPGG SNAADMQLKL AQQLLQQAQQ 300 GGQGQEALQS RLAAQLAGLS LQQQQQKAAA ADGEAAKQSQ QQSLALELLS LLASQQQQHQ 360 AQQQQAQHQA QQQAQQQAQQ QQQLAAAAAA ALAASSSLQA QSGGGGNPGL VAALQQLAAM 420 GLDLQALAVG LGEGQSASPQ GPSRSAPPQD AMAMLAAALQ GQPPPPKEPA AAAARSPLSG 480 GSATASPPPE DAGAADPLAA LLAAAAGQPS LLSGLQGMLG QVSGGPASPP PSQSSAPAPL 540 ASERAAPATS DGSGPHASTV AAPAPPPDAA PLPPTPLEPA AAAPPAPTPS AAAAAAAAVD 600 GGTLASLLAQ YYSKPENAVT AAALLERMVA GGGPMDGAAL AALSGLGGGG GAPAAPAASQ 660 EASSAPPA

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence

MNSADANKEV VFDLDAAAFS SDDFRMFQFK VRPIGRAWAD RGGERDHRMQ VKRCPRARPH  60
DWTQCPFAHP GEKAKRRDPR KYRYSGTACP EFRRNGCCRR GDACPFAHGV FECWLHPSRY  120
RTQMCTDGSS CKRRVCFFAH TESELRKPED DPLWLQQQLH AELAAEQQVQ QQIQALKVFA  180
NILGPNSGTT GGQQAAATAT QQPNMDGAGG SSNDGLLQLL QLVEAQQQQQ QQQQQAPPPP  240
PPPPLAPSTS APANLAGLLS AVTAAAGGAS GGGGGAAPGG SNAADMQLKL AQQLLQQAQQ  300
GGQGQEALQS RLAAQLAGLS LQQQQQKAAA ADGEAAKQSQ QQSLALELLS LLASQQQQHQ  360
AQQQQAQHQA QQQAQQQAQQ QQQLAAAAAA ALAASSSLQA QSGGGGNPGL VAALQQLAAM  420
GLDLQALAVG LGEGQSASPQ GPSRSAPPQD AMAMLAAALQ GQPPPPKEPA AAAARSPLSG  480
GSATASPPPE DAGAADPLAA LLAAAAGQPS LLSGLQGMLG QVSGGPASPP PSQSSAPAPL  540
ASERAAPATS DGSGPHASTV AAPAPPPDAA PLPPTPLEPA AAAPPAPTPS AAAAAAAAVD  600
GGTLASLLAQ YYSKPENAVT AAALLERMVA GGGPMDGAAL AALSGLGGGG GAPAAPAASQ  660
EASSAPPA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25900.2	8e-51	C3H family protein