PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH06415.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

C3H

Protein Properties

Length: 620aa MW: 66864.8 Da PI: 10.0114

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH06415.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.2	2.4e-12	194	219	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC ++ + G C+yG+rC+FaHg PNH06415.1 194 FKTKLCATWKKEGSCSYGSRCHFAHG 219 69***********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence
MLQLLGRGDC RSQAAAPRSS RIARAALLAA THGTAPPTSA PQSSGRCRAA LAAAASCALG 60 PVRPEVHLRQ RLAEGDHPWF WPHRLLLLLL LLLLLLLLLL PLVLLVLLMQ FWPAGAGGTA 120 LAAVMVALCG GGAAATDTRG RRNGLHGAPG AGGGGAAVDC RRGFAWRLGV VRDNRLRMNM 180 AFGMRKHEPE QQLFKTKLCA TWKKEGSCSY GSRCHFAHGT DELRGLPTDV PAHLNHRIPC 240 DLGQDARKAK ACKYGLSCTH GASCKFLHPG EQGYEAAQMA GVAAPAPRPP PPPPPPPPGA 300 AAHRPAAAAP SGHAGLKPPP QPPAATPAQL YKTKLCKSWT SDGCCPNPKC PFAHGEAELR 360 PLAHRRLGRD CLLISTSLLL RRRVPLRTGP PPLPLLQWGR SPRRRNLAKA DEMLEQLRTC 420 GRALSREQLT KLVNAAAVDM LNPQLLKKLL RAVDPAVHGD WTLLGVEHRL SSTFVYCGLL 480 HEVIVSGADN VLNPYKFSGD TEATADEFLQ RVLGLVRLIC EKRPSAVLDL VVLEESRLHE 540 QTRELVTPLE ALLQRTAGDL GPRLEQLLLA VAPLPRLLSA PAWEAQQAAV AMCEHFARQP 600 LGSRVHPEQW VERGSFLQAQ

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence

MLQLLGRGDC RSQAAAPRSS RIARAALLAA THGTAPPTSA PQSSGRCRAA LAAAASCALG  60
PVRPEVHLRQ RLAEGDHPWF WPHRLLLLLL LLLLLLLLLL PLVLLVLLMQ FWPAGAGGTA  120
LAAVMVALCG GGAAATDTRG RRNGLHGAPG AGGGGAAVDC RRGFAWRLGV VRDNRLRMNM  180
AFGMRKHEPE QQLFKTKLCA TWKKEGSCSY GSRCHFAHGT DELRGLPTDV PAHLNHRIPC  240
DLGQDARKAK ACKYGLSCTH GASCKFLHPG EQGYEAAQMA GVAAPAPRPP PPPPPPPPGA  300
AAHRPAAAAP SGHAGLKPPP QPPAATPAQL YKTKLCKSWT SDGCCPNPKC PFAHGEAELR  360
PLAHRRLGRD CLLISTSLLL RRRVPLRTGP PPLPLLQWGR SPRRRNLAKA DEMLEQLRTC  420
GRALSREQLT KLVNAAAVDM LNPQLLKKLL RAVDPAVHGD WTLLGVEHRL SSTFVYCGLL  480
HEVIVSGADN VLNPYKFSGD TEATADEFLQ RVLGLVRLIC EKRPSAVLDL VVLEESRLHE  540
QTRELVTPLE ALLQRTAGDL GPRLEQLLLA VAPLPRLLSA PAWEAQQAAV AMCEHFARQP  600
LGSRVHPEQW VERGSFLQAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	1e-07	C3H family protein