PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PNH06415.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
Family C3H
Protein Properties Length: 620aa    MW: 66864.8 Da    PI: 10.0114
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PNH06415.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12194219126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC ++ + G C+yG+rC+FaHg
  PNH06415.1 194 FKTKLCATWKKEGSCSYGSRCHFAHG 219
                 69***********************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    
MLQLLGRGDC RSQAAAPRSS RIARAALLAA THGTAPPTSA PQSSGRCRAA LAAAASCALG  60
PVRPEVHLRQ RLAEGDHPWF WPHRLLLLLL LLLLLLLLLL PLVLLVLLMQ FWPAGAGGTA  120
LAAVMVALCG GGAAATDTRG RRNGLHGAPG AGGGGAAVDC RRGFAWRLGV VRDNRLRMNM  180
AFGMRKHEPE QQLFKTKLCA TWKKEGSCSY GSRCHFAHGT DELRGLPTDV PAHLNHRIPC  240
DLGQDARKAK ACKYGLSCTH GASCKFLHPG EQGYEAAQMA GVAAPAPRPP PPPPPPPPGA  300
AAHRPAAAAP SGHAGLKPPP QPPAATPAQL YKTKLCKSWT SDGCCPNPKC PFAHGEAELR  360
PLAHRRLGRD CLLISTSLLL RRRVPLRTGP PPLPLLQWGR SPRRRNLAKA DEMLEQLRTC  420
GRALSREQLT KLVNAAAVDM LNPQLLKKLL RAVDPAVHGD WTLLGVEHRL SSTFVYCGLL  480
HEVIVSGADN VLNPYKFSGD TEATADEFLQ RVLGLVRLIC EKRPSAVLDL VVLEESRLHE  540
QTRELVTPLE ALLQRTAGDL GPRLEQLLLA VAPLPRLLSA PAWEAQQAAV AMCEHFARQP  600
LGSRVHPEQW VERGSFLQAQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-07C3H family protein