PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PNH06408.1
Organism
Tetrabaena socialis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
Family C3H
Protein Properties Length: 413aa    MW: 44390.9 Da    PI: 11.5697
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PNH06408.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.82.4e-101236226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                kt++C  ++ +G C yG+rC+FaHg
  PNH06408.1 12 KTKICVAWRNGGSCTYGSRCHFAHG 36
                89**********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    
MRQEPAGPPL HKTKICVAWR NGGSCTYGSR CHFAHGTDEL RAPPPHAPPA VVSYNTKSPG  60
KPAAAIHGGA TAAGPRGPVQ AVAAPPGVSG SSAAAAPAPA RGATRVSEYV EVASQPYNAT  120
ITAARAVPPA PGVTGRPELH QQHQQHQRQQ QQQQQQQQQQ QQQQAVRPEP RLQQQAARPG  180
PPAQPQQRPL RVPLSHHTSE RHQVAEPMVR TQGGALPQPR PQQQPQQQQQ QQQQQQQQQQ  240
QQQQLERQQQ GRLLRQQQHQ QRQQPLPRGA VAANAFVALP DALPATAATL GSLPAAPAVV  300
VTDPYAPEWV TMLQHCRACR QALAEVDLWA DRPELRAVLV GRQYASVVAA VWRESGRDAA  360
WAERPLGTAQ LAAAASAARH LPELWGALVG GAVPWVAARS AARAMRLLRG AAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-07C3H family protein