PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PNH06350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
Family MYB
Protein Properties Length: 572aa    MW: 56438.8 Da    PI: 9.8187
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PNH06350.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.31.9e-14751348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      W+ +Ede l ++vk++G++ W+ Ia+++   +  kqc+ rw +yl
       PNH06350.1  7 TWSDQEDETLRKLVKEYGPKKWSVIAAKLK-SKGSKQCRRRWKNYL 51
                     6****************************9.99***********97 PP

2Myb_DNA-binding51.72e-165898244
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     g WT+eEd  l ++++++G++ W+ Iar++g gRt++ +k+rw
       PNH06350.1 58 GGWTAEEDRVLMEGHRLHGNK-WTEIARMVG-GRTDNAVKNRW 98
                     67*******************.*********.*********** PP

Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    
MPVATATWSD QEDETLRKLV KEYGPKKWSV IAAKLKSKGS KQCRRRWKNY LNADLKSGGW  60
TAEEDRVLME GHRLHGNKWT EIARMVGGRT DNAVKNRWAA LCKRDVRGVT RRGPTGGGGG  120
GGGGRGGGGG GGRRARASDS DGGASDLELE DESEEGDEVI RSSSISSGSR AASPVRGGRG  180
GGGAGVGDGA DGGIGRTPPT RGAGGGGIRG GPAAAVAAAV PYDSGSSGGR SSMLGRRRAS  240
SGGGGGGTPP LPQPDAAAAA AAAAAAKRRA LMLGGAASAA AAAAATAGGA VADGPALRTP  300
RTPRLLAQLQ EASLYRASNS IYSLGAHGRG LAQAPGAAGG GAGGAAGAGK AEGPTHRLAQ  360
VAAVAGGGGG GGGVVQPKKP PLTINIPNAA SADPSAAPPS TSGGCGIEIR VLKELLTPCE  420
IQYARELNDM QLPLHICLAD HEQEEEAAAA VAAGGYMAGD PPLTTSRQVR EGAAGAGSSI  480
EKLMPFSPAA PDFSPSGFLR TTRGSGGGGG GGPPTQRGNG SEATGGGGGG GIVVFPAFSQ  540
AELLLLLEVL HSEDLQDLPP PPSAQQLLQA AH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121131GGGGRGGGGGG
2122132GGGGRGGGGGG
3123133GGGGRGGGGGG
4125133RGGGGGGGR
5177187GGGGRGGGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.11e-34MYB family protein