PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PNH06350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
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Family | MYB | ||||||||
Protein Properties | Length: 572aa MW: 56438.8 Da PI: 9.8187 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.3 | 1.9e-14 | 7 | 51 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W+ +Ede l ++vk++G++ W+ Ia+++ + kqc+ rw +yl PNH06350.1 7 TWSDQEDETLRKLVKEYGPKKWSVIAAKLK-SKGSKQCRRRWKNYL 51 6****************************9.99***********97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2e-16 | 58 | 98 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 g WT+eEd l ++++++G++ W+ Iar++g gRt++ +k+rw PNH06350.1 58 GGWTAEEDRVLMEGHRLHGNK-WTEIARMVG-GRTDNAVKNRW 98 67*******************.*********.*********** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence |
MPVATATWSD QEDETLRKLV KEYGPKKWSV IAAKLKSKGS KQCRRRWKNY LNADLKSGGW 60 TAEEDRVLME GHRLHGNKWT EIARMVGGRT DNAVKNRWAA LCKRDVRGVT RRGPTGGGGG 120 GGGGRGGGGG GGRRARASDS DGGASDLELE DESEEGDEVI RSSSISSGSR AASPVRGGRG 180 GGGAGVGDGA DGGIGRTPPT RGAGGGGIRG GPAAAVAAAV PYDSGSSGGR SSMLGRRRAS 240 SGGGGGGTPP LPQPDAAAAA AAAAAAKRRA LMLGGAASAA AAAAATAGGA VADGPALRTP 300 RTPRLLAQLQ EASLYRASNS IYSLGAHGRG LAQAPGAAGG GAGGAAGAGK AEGPTHRLAQ 360 VAAVAGGGGG GGGVVQPKKP PLTINIPNAA SADPSAAPPS TSGGCGIEIR VLKELLTPCE 420 IQYARELNDM QLPLHICLAD HEQEEEAAAA VAAGGYMAGD PPLTTSRQVR EGAAGAGSSI 480 EKLMPFSPAA PDFSPSGFLR TTRGSGGGGG GGPPTQRGNG SEATGGGGGG GIVVFPAFSQ 540 AELLLLLEVL HSEDLQDLPP PPSAQQLLQA AH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 131 | GGGGRGGGGGG |
2 | 122 | 132 | GGGGRGGGGGG |
3 | 123 | 133 | GGGGRGGGGGG |
4 | 125 | 133 | RGGGGGGGR |
5 | 177 | 187 | GGGGRGGGGGG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02820.1 | 1e-34 | MYB family protein |