PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH06207.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

SBP

Protein Properties

Length: 484aa MW: 48562.5 Da PI: 6.3133

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH06207.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	99.3	3.4e-31	192	274	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STT......TT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrr......Lakhnerrrkkqa 78 C+v+gC++dl+ + +y++r++ Cevh ka++++ +g++qrfCqqC+rfhel+efD +krsCr+r L++hn rrrk+++ PNH06207.1 192 CHVDGCNTDLTGLSSYYQRYRTCEVHLKATSIIKDGTHQRFCQQCGRFHELNEFDGNKRSCRSRcvgdqgLQSHNVRRRKRTE 274 ************************************************************99777777899*****875 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
NLLAGLASIL SATTAAVPPG PPPGGLGGPG GSPTIQRTNS GGSGAAAAAA AAAAASAAGM 60 PPGAMLLPGL PFQLPLDNQS LQGLAPFMHL FGPGGLPGLG GDGSMPYSLS IPGVNGQMMP 120 LNLAALLGGN GMDLETMNQM NELAAVGDPS RKSSGAKRPA DGSGGGGYKR ERSEEGRQRE 180 SIPNLPHLKG KCHVDGCNTD LTGLSSYYQR YRTCEVHLKA TSIIKDGTHQ RFCQQCGRFH 240 ELNEFDGNKR SCRSRCVGDQ GLQSHNVRRR KRTEEQMANA GSGGDHGGGS QMGNHNSGMG 300 SQGMQQMGQM PMQQQQMMGG QPNFADIMGG MGAPTLEGIL AALGQQPEDM NNALAQLLAN 360 LPQNFLGGLA PPPDPGQAAL QLALQVAAGG GAEHMAPPLL DSLLKSATGA PGLGPAPGEL 420 AQQDLQQQLA MALAGAPAAA ASIGDEPSDG AAGVVAALAA AAAAAAGHHH GQQDGGGPGD 480 APQG

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

NLLAGLASIL SATTAAVPPG PPPGGLGGPG GSPTIQRTNS GGSGAAAAAA AAAAASAAGM  60
PPGAMLLPGL PFQLPLDNQS LQGLAPFMHL FGPGGLPGLG GDGSMPYSLS IPGVNGQMMP  120
LNLAALLGGN GMDLETMNQM NELAAVGDPS RKSSGAKRPA DGSGGGGYKR ERSEEGRQRE  180
SIPNLPHLKG KCHVDGCNTD LTGLSSYYQR YRTCEVHLKA TSIIKDGTHQ RFCQQCGRFH  240
ELNEFDGNKR SCRSRCVGDQ GLQSHNVRRR KRTEEQMANA GSGGDHGGGS QMGNHNSGMG  300
SQGMQQMGQM PMQQQQMMGG QPNFADIMGG MGAPTLEGIL AALGQQPEDM NNALAQLLAN  360
LPQNFLGGLA PPPDPGQAAL QLALQVAAGG GAEHMAPPLL DSLLKSATGA PGLGPAPGEL  420
AQQDLQQQLA MALAGAPAAA ASIGDEPSDG AAGVVAALAA AAAAAAGHHH GQQDGGGPGD  480
APQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57920.1	7e-24	SBP family protein