PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH06180.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

AP2

Protein Properties

Length: 874aa MW: 84358.9 Da PI: 4.4594

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH06180.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	27.6	7.2e-09	5	54	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt.aeeAakaaiaarkkleg 55 s+++GV+w+ k+++W ++I + k ++g+ +e+Aa++++ ++ k +g PNH06180.1 5 SQFRGVSWHIKSQKWQCYITV------GKERRIGTNHErEEDAARQRDSMAYKAFG 54 789****************......46666666666579********99877 PP
2	AP2	47.3	5e-15	96	145	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GV+wdk +g+W+A+I++ kr lg+f + +Aa a++aa++kl+g+ PNH06180.1 96 AYRGVSWDKASGKWRAQIQED-----GKRKGLGYFTEELQAALAYDAAARKLHGA 145 69*************9993.....3******99************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 874 aa Download sequence
MSGSSQFRGV SWHIKSQKWQ CYITVGKERR IGTNHEREED AARQRDSMAY KAFGAAAQLN 60 FELSAEQRAE LDAMTFEELI ASFRVASERF SSGASAYRGV SWDKASGKWR AQIQEDGKRK 120 GLGYFTEELQ AALAYDAAAR KLHGAKAKLN FPHGGAGSAP AAAEGSPEPG PAAAAAGPTG 180 AAAAAAAPVR SAGGHKPPSA PRPRGKPATG SSPGAGPASA EAAAAASSDG TAAAAAARGP 240 VHAAAAAAAP PRASAAAAAA AAAAGPLAAA SAPTASCTSK RRPMRPVALG GGGAAPARAA 300 TAADAGATAG GSSALPPCSA AAGTAANAVT AATVPSSTAK SAAATTSGGC AKPSPAATAS 360 AVLAPGAANG ARSRDAATVA APRPATARGS LDLGQPRNGS PARGAPAALA AAPASDGTGG 420 TPPQDPLPPE RQAQALGPSA AHELDRPGIE GVGDGGAQRD EGVVGVDLSE QPQAGSGGEE 480 EVGPEEEAAD GGGEGGTGYD SGGGGGNSAY GSDGGSEYGG EDHFSDQGLL SGSSYYTDED 540 GDEMDFFYHP LQPLRGSGTR TNADGGGAAA VDDPPDAPAN GQPPTANSGC GGASPEALAP 600 ENDVHQPTPG RPGIFGAGDA ADAAQGAVTT AGQEGAAVEA CEAVAVVQET TAVDAAGAAE 660 AARAGAADVE GAALSLLDAA EDAQAVADDA AATRTALEAT EEAEIAQMAA KRARHESLRE 720 WAALLVGPEE RLMLQDAMLD MYGEEDMQEL VGLEDLITAA AAAVGPEVTA AVTEAAGYGA 780 SGSGSGSGDA SGSGDGGGGS SLSGAFGVAG SGGGVVSAAV LAAAAGAAGG TGAALPPPPV 840 PEPRGRVDAV VASYLRLARD GKRLVARATG GLLV

Sequence ? help Back to Top

Protein Sequence Length: 874 aa Download sequence

MSGSSQFRGV SWHIKSQKWQ CYITVGKERR IGTNHEREED AARQRDSMAY KAFGAAAQLN  60
FELSAEQRAE LDAMTFEELI ASFRVASERF SSGASAYRGV SWDKASGKWR AQIQEDGKRK  120
GLGYFTEELQ AALAYDAAAR KLHGAKAKLN FPHGGAGSAP AAAEGSPEPG PAAAAAGPTG  180
AAAAAAAPVR SAGGHKPPSA PRPRGKPATG SSPGAGPASA EAAAAASSDG TAAAAAARGP  240
VHAAAAAAAP PRASAAAAAA AAAAGPLAAA SAPTASCTSK RRPMRPVALG GGGAAPARAA  300
TAADAGATAG GSSALPPCSA AAGTAANAVT AATVPSSTAK SAAATTSGGC AKPSPAATAS  360
AVLAPGAANG ARSRDAATVA APRPATARGS LDLGQPRNGS PARGAPAALA AAPASDGTGG  420
TPPQDPLPPE RQAQALGPSA AHELDRPGIE GVGDGGAQRD EGVVGVDLSE QPQAGSGGEE  480
EVGPEEEAAD GGGEGGTGYD SGGGGGNSAY GSDGGSEYGG EDHFSDQGLL SGSSYYTDED  540
GDEMDFFYHP LQPLRGSGTR TNADGGGAAA VDDPPDAPAN GQPPTANSGC GGASPEALAP  600
ENDVHQPTPG RPGIFGAGDA ADAAQGAVTT AGQEGAAVEA CEAVAVVQET TAVDAAGAAE  660
AARAGAADVE GAALSLLDAA EDAQAVADDA AATRTALEAT EEAEIAQMAA KRARHESLRE  720
WAALLVGPEE RLMLQDAMLD MYGEEDMQEL VGLEDLITAA AAAVGPEVTA AVTEAAGYGA  780
SGSGSGSGDA SGSGDGGGGS SLSGAFGVAG SGGGVVSAAV LAAAAGAAGG TGAALPPPPV  840
PEPRGRVDAV VASYLRLARD GKRLVARATG GLLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	6e-13	AP2 family protein