PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH05549.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

MYB_related

Protein Properties

Length: 1433aa MW: 147476 Da PI: 7.4805

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH05549.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.8	2.5e-13	533	577	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+W ++Ede+l +av+ G + Wk +a+++ gRt+ qc++r+ ++l PNH05549.1 533 GKWAADEDERLRQAVAAAGEK-WKDVAARVA-GRTARQCRERYVNLL 577 89*****************.*****.*********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1433 aa Download sequence
MVYSIRYECW YLGRVRAIEG DTLHINYPGW PRSEDDALHK YSDRLDVSTG GRKKWPAAGS 60 DAADGEVRVR VGARAKAHGK AQEEGSTGPA RRRRGQVTGR GRGRGRGRGR GSSGDGGGNG 120 GRGGSGRSGN RGRGRGRSAA AVDAVAAAAG SSRGSVAAGP GQGGDGGSGG ADGGGGGGGE 180 GTRGVCGAGR GDGDGDGQYP PHAPGGAPPC ASAAGGCGEA GGKSAANAPP CGNRCAERLN 240 GAGAGADEER AGAGGGAASQ PLPPAAQPRE GAGADAGRCG VATDPGVAAT ERGGGMRDGP 300 ASGGSGGDGA AAPTASGAAP GAAAGGTACV VAGAAAAGKG SGCRGCPEVG EAEERAGAGS 360 QEEGTKVGLE KEVEVEEEKA KREADGVGGE AASAVGTEGG NGAGLLALSR RNSGTLPPCP 420 ACARQEGPGA VRAAAGPGPR GEEGPADAEM AEAAAGPAAG EAAAAEAVVA EEAARPATGE 480 EAAAEAVVAE AAAGPAAGEA AAAEAVVAEA AAGPAVRDRW HGVMTAGGPR RTGKWAADED 540 ERLRQAVAAA GEKWKDVAAR VAGRTARQCR ERYVNLLRPG LRFGQFSEQE AKVLVATCSE 600 LQAAYGRVIW ARVAERLPGR TDDQCSRAYE ALVRHDKAHV GNKRGSGSHR PLKAPSRRRS 660 RRAEQQESGE EEEEEEEEEE EEEEETRQGE AEEEKEKEGG PEVDAEAAQP EPQQAGPQQP 720 TQPGPTQQPE QPQPQQPAPT QQARQAGLAG PPGPGAARER RKGGRPLRQP SLAQLGGGGG 780 GGVALAAVAG RLDVGALGLA PPEPLRPRPP PAPPHPRPQQ QQQQPQAVPR PPPQPRATRK 840 RAEGGAPGVG AAGVPVDGSV GLLPSLPSLP SRGGSPPGAW AGGEEARQGV GGQRHGAQGE 900 LAAVRAELEA ERAELEAERR RSAQLQAQTA PADHALVAVL PHASGRVRSA AVRLTGRLAV 960 ELPADTVLVL PREHVSPELM AAAEPLQVGR GQLKPWSQQQ QQEPQQQQQP QQQQPQQQQQ 1020 PQQQPQQQQR GGDSGGETDA GPGGRRGGGA EAEAEERPAK RQRSRQSQGL AGAEEGGAQA 1080 AQGDAGALQQ QQQQDRQQQQ QGRQWQQEQQ QHLQHLHQQE QQLQQLRYEL LQQKQKQMQQ 1140 LQRDLARLRP APAEPARAAA HLVPHPPAPP VRTVRTVRPA GALLFAPRYA ARPIGRHAPL 1200 SPLRYVLPQQ QQQQHQDQQL QLQEQQQQEQ RQWQQRQPAV GPISGPGPGP EPAPRLPASV 1260 PDGAGGLGAG HGPRDGAAPS RPHEPWPIAA DHPLLQGGRA DGADLPPSMA AQLLMQHLRA 1320 QPRPQAQGTQ PGPLLQGPLV QGPLVQGQQQ LQPQGQHGQA GQQAQAQGWQ GQPQPQRQAQ 1380 AQGQAPPWPQ AQGQAPPRPQ AQAPFQLRQL AQARQVQPQA QPPPAVEYYE SIL

Sequence ? help Back to Top

Protein Sequence Length: 1433 aa Download sequence

MVYSIRYECW YLGRVRAIEG DTLHINYPGW PRSEDDALHK YSDRLDVSTG GRKKWPAAGS  60
DAADGEVRVR VGARAKAHGK AQEEGSTGPA RRRRGQVTGR GRGRGRGRGR GSSGDGGGNG  120
GRGGSGRSGN RGRGRGRSAA AVDAVAAAAG SSRGSVAAGP GQGGDGGSGG ADGGGGGGGE  180
GTRGVCGAGR GDGDGDGQYP PHAPGGAPPC ASAAGGCGEA GGKSAANAPP CGNRCAERLN  240
GAGAGADEER AGAGGGAASQ PLPPAAQPRE GAGADAGRCG VATDPGVAAT ERGGGMRDGP  300
ASGGSGGDGA AAPTASGAAP GAAAGGTACV VAGAAAAGKG SGCRGCPEVG EAEERAGAGS  360
QEEGTKVGLE KEVEVEEEKA KREADGVGGE AASAVGTEGG NGAGLLALSR RNSGTLPPCP  420
ACARQEGPGA VRAAAGPGPR GEEGPADAEM AEAAAGPAAG EAAAAEAVVA EEAARPATGE  480
EAAAEAVVAE AAAGPAAGEA AAAEAVVAEA AAGPAVRDRW HGVMTAGGPR RTGKWAADED  540
ERLRQAVAAA GEKWKDVAAR VAGRTARQCR ERYVNLLRPG LRFGQFSEQE AKVLVATCSE  600
LQAAYGRVIW ARVAERLPGR TDDQCSRAYE ALVRHDKAHV GNKRGSGSHR PLKAPSRRRS  660
RRAEQQESGE EEEEEEEEEE EEEEETRQGE AEEEKEKEGG PEVDAEAAQP EPQQAGPQQP  720
TQPGPTQQPE QPQPQQPAPT QQARQAGLAG PPGPGAARER RKGGRPLRQP SLAQLGGGGG  780
GGVALAAVAG RLDVGALGLA PPEPLRPRPP PAPPHPRPQQ QQQQPQAVPR PPPQPRATRK  840
RAEGGAPGVG AAGVPVDGSV GLLPSLPSLP SRGGSPPGAW AGGEEARQGV GGQRHGAQGE  900
LAAVRAELEA ERAELEAERR RSAQLQAQTA PADHALVAVL PHASGRVRSA AVRLTGRLAV  960
ELPADTVLVL PREHVSPELM AAAEPLQVGR GQLKPWSQQQ QQEPQQQQQP QQQQPQQQQQ  1020
PQQQPQQQQR GGDSGGETDA GPGGRRGGGA EAEAEERPAK RQRSRQSQGL AGAEEGGAQA  1080
AQGDAGALQQ QQQQDRQQQQ QGRQWQQEQQ QHLQHLHQQE QQLQQLRYEL LQQKQKQMQQ  1140
LQRDLARLRP APAEPARAAA HLVPHPPAPP VRTVRTVRPA GALLFAPRYA ARPIGRHAPL  1200
SPLRYVLPQQ QQQQHQDQQL QLQEQQQQEQ RQWQQRQPAV GPISGPGPGP EPAPRLPASV  1260
PDGAGGLGAG HGPRDGAAPS RPHEPWPIAA DHPLLQGGRA DGADLPPSMA AQLLMQHLRA  1320
QPRPQAQGTQ PGPLLQGPLV QGPLVQGQQQ LQPQGQHGQA GQQAQAQGWQ GQPQPQRQAQ  1380
AQGQAPPWPQ AQGQAPPRPQ AQAPFQLRQL AQARQVQPQA QPPPAVEYYE SIL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	109	RGRGRGRGRG
2	100	110	RGRGRGRGRGR
3	102	111	RGRGRGRGRG
4	1043	1049	GGRRGGG
5	1060	1065	KRQRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	1e-15	MYB family protein