PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH04574.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

SBP

Protein Properties

Length: 1871aa MW: 184965 Da PI: 8.2732

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH04574.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	83.3	3.1e-26	40	113	2	75
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 qv+gC +dls +k y+rr+++Ce h k+ + +++g+ rfCqqC+rfh ++ef+ +krsCrr L + +rr PNH04574.1 40 AQVKGCPVDLSLCKAYYRRFRICERHLKTLSLCIEGKASRFCQQCGRFHVIEEFEGNKRSCRRALLTRFYKRRN 113 59*************************************************************98777666665 PP

Sequence ? help Back to Top
Protein Sequence Length: 1871 aa Download sequence
MRKTGDGAAA AQPYMAKRWL DALQAPSPTR APPHAPPRAA QVKGCPVDLS LCKAYYRRFR 60 ICERHLKTLS LCIEGKASRF CQQCGRFHVI EEFEGNKRSC RRALLTRFYK RRNMSVPPEV 120 LPPPPPDSVL QAGARDTDPK PRSKVRSPPE PDPSQPPQRR KRGRPRAAPM DVQDLASGDV 180 PELEAGGGLH LLGAQPAVSP SRPFPTSAQQ HPQLLLHLQG IKTEPEQVRP WGVCVLRRRF 240 RLRAAGSGRG SCAGLQRRMG ARASAAARTP RPRVSGPCRS GSTSSGVGGG SGSGGDPPSA 300 HLRYGFNELG AQQPGQQPPG RLGEAGPGRA HGAGLGAGQV QVQQQQLLPL RGEGGLGAME 360 GRVPGAHGLL GDQLTHLHLQ QQQQQQQQRH PAGGPARPPF SPLRPGNSPS PEHGDDLRAR 420 APSRLQQPQL QPQQQRQQQN GHDSQSTPYG GGGGGMAPAW HLQQQRQVVE QGPGWGLAAG 480 AADVTANGSL PPGGGVRAET LSRLQRHMLL LQQPGDAAAP TAAVFDLATA VSGGGLANGG 540 GGGGLGGGGL CNGGGSGGLG GGGLGGSGGL GGGGGLGGSG GLGGDGGLGG GGSGGLAEQW 600 QRAGGAWGHG HGGVGGGGNG ILGGHMGCGS LSLAPTGGSV GVPAIGVQHG TADALELELL 660 SIASESLMAD QGAHAHLAYT GPASRPLGLD IGSAEPGALL CAAGLQLGAV GNGCGGGPAA 720 QGLVSELRGM RMVSGGSGRD GGGGGSTSGS GGWGGEASGE GADGAACGGG QLAFGALAGG 780 GHAATLLPHR HTSTASSGDA SAAGLTLVQQ LQLRALQQEQ QHLQHHHQQH QQQHHVSGSA 840 WQLGAAGALA GGSTAGPYGG GGIVEGPREG AGGGPGQLQL QFMQLQQQHQ QRLQLQQQQE 900 QEQQAQRMRQ LQQLHQQQQR HFQQQQQQQP SLKDAALALL AQGGAHATYS PPASLLERLS 960 IKIHKCRPEQ LSPDLASQLT DWLITADASV VQGFVRPGCT HLVVDLLYGD RERLMQALFG 1020 AEGSDPRDAA ATLARRVLGA PPDTGPTSDM HLQLGDSTGS LRSFTSGHTW GSTGAPFVPD 1080 VAAPAAGTPG DSPTAAAAAP HEAAPPASLT AAAPPPPPRP ASGAHPGGAP RGRRLSPEAS 1140 YAAAVAPPAG LVPAPRAAAA IAAALAAGED VEAAAAAATA AEIAATAAAA ARRARRGSRH 1200 RVPQYGDNSG GALVAANANA PLLEGPGATA LLPLSDPGLR HRRLEPEVLA AAEAAYNASL 1260 AASAAAGETP SPAAGSPAAR TQQQQHASPP APAPAPAGSA VAGASELRLD SYAAEAAGTR 1320 EAAAAVAVAV AAAAGEGGTR GAGAQGPIRR AEAVAVTLMR EQHKQQEEGV SARREAAAVA 1380 AAVAVVQRLG GGEGAARVDA RAALRRRQEQ QEQQERSRLR LRQQQQQLGV RARALLVFFC 1440 SRCGPAAGGA LGGWWLVLNF LLTADAAPAA PAAATGAAAA APGAPATTAD ADAAQGAADA 1500 SAAAAPPAAA KPAEGAAAAE PAAADAAAGA PVAEDARAAP NAPAAGGCSN PQLAFAALEE 1560 QVRAEGGGMG LLHHAVRSGC AETVALLLAA SRRAGAPLDV ARPGPYGVTA VHLAALLPYG 1620 GAAILDAIVD HAAATDGGGG DGGGAPAPWP SGPAAAAADA DGAGAASGSG GGAAANSGDL 1680 GMGGGSGAPG ALVAYEPRAA AGATSVLSQE QVEVGLGEEV EGVALARNAA ADAEAEASSA 1740 EGPLDIGVAF GSIASWVDGS SPHRAPSPAP SSGGVAADAV PTLKGAALYG TAVAAPAGGG 1800 AAAGLGGRGA SGGAAAYAAV AVAAAAVAAL WRVGGWAPML LALPLALLLA VLAGAVPWRR 1860 SCAGGGSLGA L

Sequence ? help Back to Top

Protein Sequence Length: 1871 aa Download sequence

MRKTGDGAAA AQPYMAKRWL DALQAPSPTR APPHAPPRAA QVKGCPVDLS LCKAYYRRFR  60
ICERHLKTLS LCIEGKASRF CQQCGRFHVI EEFEGNKRSC RRALLTRFYK RRNMSVPPEV  120
LPPPPPDSVL QAGARDTDPK PRSKVRSPPE PDPSQPPQRR KRGRPRAAPM DVQDLASGDV  180
PELEAGGGLH LLGAQPAVSP SRPFPTSAQQ HPQLLLHLQG IKTEPEQVRP WGVCVLRRRF  240
RLRAAGSGRG SCAGLQRRMG ARASAAARTP RPRVSGPCRS GSTSSGVGGG SGSGGDPPSA  300
HLRYGFNELG AQQPGQQPPG RLGEAGPGRA HGAGLGAGQV QVQQQQLLPL RGEGGLGAME  360
GRVPGAHGLL GDQLTHLHLQ QQQQQQQQRH PAGGPARPPF SPLRPGNSPS PEHGDDLRAR  420
APSRLQQPQL QPQQQRQQQN GHDSQSTPYG GGGGGMAPAW HLQQQRQVVE QGPGWGLAAG  480
AADVTANGSL PPGGGVRAET LSRLQRHMLL LQQPGDAAAP TAAVFDLATA VSGGGLANGG  540
GGGGLGGGGL CNGGGSGGLG GGGLGGSGGL GGGGGLGGSG GLGGDGGLGG GGSGGLAEQW  600
QRAGGAWGHG HGGVGGGGNG ILGGHMGCGS LSLAPTGGSV GVPAIGVQHG TADALELELL  660
SIASESLMAD QGAHAHLAYT GPASRPLGLD IGSAEPGALL CAAGLQLGAV GNGCGGGPAA  720
QGLVSELRGM RMVSGGSGRD GGGGGSTSGS GGWGGEASGE GADGAACGGG QLAFGALAGG  780
GHAATLLPHR HTSTASSGDA SAAGLTLVQQ LQLRALQQEQ QHLQHHHQQH QQQHHVSGSA  840
WQLGAAGALA GGSTAGPYGG GGIVEGPREG AGGGPGQLQL QFMQLQQQHQ QRLQLQQQQE  900
QEQQAQRMRQ LQQLHQQQQR HFQQQQQQQP SLKDAALALL AQGGAHATYS PPASLLERLS  960
IKIHKCRPEQ LSPDLASQLT DWLITADASV VQGFVRPGCT HLVVDLLYGD RERLMQALFG  1020
AEGSDPRDAA ATLARRVLGA PPDTGPTSDM HLQLGDSTGS LRSFTSGHTW GSTGAPFVPD  1080
VAAPAAGTPG DSPTAAAAAP HEAAPPASLT AAAPPPPPRP ASGAHPGGAP RGRRLSPEAS  1140
YAAAVAPPAG LVPAPRAAAA IAAALAAGED VEAAAAAATA AEIAATAAAA ARRARRGSRH  1200
RVPQYGDNSG GALVAANANA PLLEGPGATA LLPLSDPGLR HRRLEPEVLA AAEAAYNASL  1260
AASAAAGETP SPAAGSPAAR TQQQQHASPP APAPAPAGSA VAGASELRLD SYAAEAAGTR  1320
EAAAAVAVAV AAAAGEGGTR GAGAQGPIRR AEAVAVTLMR EQHKQQEEGV SARREAAAVA  1380
AAVAVVQRLG GGEGAARVDA RAALRRRQEQ QEQQERSRLR LRQQQQQLGV RARALLVFFC  1440
SRCGPAAGGA LGGWWLVLNF LLTADAAPAA PAAATGAAAA APGAPATTAD ADAAQGAADA  1500
SAAAAPPAAA KPAEGAAAAE PAAADAAAGA PVAEDARAAP NAPAAGGCSN PQLAFAALEE  1560
QVRAEGGGMG LLHHAVRSGC AETVALLLAA SRRAGAPLDV ARPGPYGVTA VHLAALLPYG  1620
GAAILDAIVD HAAATDGGGG DGGGAPAPWP SGPAAAAADA DGAGAASGSG GGAAANSGDL  1680
GMGGGSGAPG ALVAYEPRAA AGATSVLSQE QVEVGLGEEV EGVALARNAA ADAEAEASSA  1740
EGPLDIGVAF GSIASWVDGS SPHRAPSPAP SSGGVAADAV PTLKGAALYG TAVAAPAGGG  1800
AAAGLGGRGA SGGAAAYAAV AVAAAAVAAL WRVGGWAPML LALPLALLLA VLAGAVPWRR  1860
SCAGGGSLGA L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	2e-17	SBP family protein