PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH04161.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

C3H

Protein Properties

Length: 1206aa MW: 122366 Da PI: 6.6325

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH04161.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.9	4.7e-10	753	774	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C +++rtGtC +G++CkF H+ PNH04161.1 753 PCAHYLRTGTCGFGASCKFDHP 774 8********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1206 aa Download sequence
MPVDRGKGSQ IGGLVSTGAK VGLAEGAAAA RAKGLVPATS TFDAFLLTDA GRAVVAAPNP 60 SRGRIWGTFL AAPACTAISR SPGLDNVGLH SRVMATVLHF HANLVWRGHG PETVIKRTAA 120 LRLLAEPHGR LPLDELTHAL ATSPDLAPGG AGGVPPDLLE PAHLADLLAS DPNFSYDGAT 180 DELLVDSAGL LASGKACIRG LIDRAWPRAA SPLGWARHQL AGYVVSRQSL DMKTAELFTA 240 PLDAAEIFLA AAWVSRMELL EYGSESPYDS VEQLVADEPC LELLPEQRAV KVVFSALLPR 300 GGVGAAAAAA TTASAFAGTG ASAAAAAAAA QSNGAAGSGR VGGGGGGDLA SVAAALRLST 360 SWADERDAEE EAEAEEALAM GADADSFWDG FSAARAAAAS TAGAGAYGAA AAHAATGHGE 420 MGGDADSFGD DSYDGLADVL EHGEGAEHED ADGDGDDGAW ASARASSDAQ GDAALGPLAA 480 AAAAAPERAL MRLDLLPQYV RAVFGGPAPA DQLMAAVAMA LVEAGRAAQQ QQQAAAQAAG 540 SGGPAFNGAD AAARYTLPLS RLVAHVRATA AHLLPDSGGG GSWHAGALMQ RLRERPSRGC 600 FRVLMTPVGE DGAGGRDGSP RPSWRDINLA GKPRAQTGRA PLPAGGLMPL SRLDEIVRKY 660 APAALPLTHL LAAEPDLFEL QEHWPGGPRG VRLRSSAVMA RAARVAPTPS AHAFSAHSGT 720 GFFGGGAGGS GPYRAVSGPL SPEALPQRPG GLPCAHYLRT GTCGFGASCK FDHPLPMPQP 780 QRQAPRGPGP LAAPPPDSHR PASDYAWGRP AAAGAAANAA ANAAAAAISA AYSLSGTLGS 840 SGAARAPVQA APPAAHHHLQ QHQQQHQQHQ QHQQHQPEEP PLHSPTPTAT ATTLPSAAAA 900 GGPGLALPSA LEVKVVVTAN TPDHNGMLAH VYAAKQVAVC CKAPQGAFGG DAPPPDLVQM 960 YVPAVAPPAG GGAAGGGDRG EAAGAAGAAP GAAAGSYPAT VYLIDAAGTV PSLSQGCDVS 1020 SRIAPLNDVC ELAVLVAVAA GAASPASISL PGLLQQHGLL ESEVATSLNL APASSPLWSA 1080 RPLSGDLRQQ AVAEVVYLIP LWHALMRRWT SLPQQLCQAK ADRLLAGQPH RHPQHQQQHQ 1140 QQHHHHQHHQ HQGGQQVGLQ LMVTSQSGSG VTHTLFTPPA GLALPMAYAV MSDMRPPPRR 1200 PVIMKP

Sequence ? help Back to Top

Protein Sequence Length: 1206 aa Download sequence

MPVDRGKGSQ IGGLVSTGAK VGLAEGAAAA RAKGLVPATS TFDAFLLTDA GRAVVAAPNP  60
SRGRIWGTFL AAPACTAISR SPGLDNVGLH SRVMATVLHF HANLVWRGHG PETVIKRTAA  120
LRLLAEPHGR LPLDELTHAL ATSPDLAPGG AGGVPPDLLE PAHLADLLAS DPNFSYDGAT  180
DELLVDSAGL LASGKACIRG LIDRAWPRAA SPLGWARHQL AGYVVSRQSL DMKTAELFTA  240
PLDAAEIFLA AAWVSRMELL EYGSESPYDS VEQLVADEPC LELLPEQRAV KVVFSALLPR  300
GGVGAAAAAA TTASAFAGTG ASAAAAAAAA QSNGAAGSGR VGGGGGGDLA SVAAALRLST  360
SWADERDAEE EAEAEEALAM GADADSFWDG FSAARAAAAS TAGAGAYGAA AAHAATGHGE  420
MGGDADSFGD DSYDGLADVL EHGEGAEHED ADGDGDDGAW ASARASSDAQ GDAALGPLAA  480
AAAAAPERAL MRLDLLPQYV RAVFGGPAPA DQLMAAVAMA LVEAGRAAQQ QQQAAAQAAG  540
SGGPAFNGAD AAARYTLPLS RLVAHVRATA AHLLPDSGGG GSWHAGALMQ RLRERPSRGC  600
FRVLMTPVGE DGAGGRDGSP RPSWRDINLA GKPRAQTGRA PLPAGGLMPL SRLDEIVRKY  660
APAALPLTHL LAAEPDLFEL QEHWPGGPRG VRLRSSAVMA RAARVAPTPS AHAFSAHSGT  720
GFFGGGAGGS GPYRAVSGPL SPEALPQRPG GLPCAHYLRT GTCGFGASCK FDHPLPMPQP  780
QRQAPRGPGP LAAPPPDSHR PASDYAWGRP AAAGAAANAA ANAAAAAISA AYSLSGTLGS  840
SGAARAPVQA APPAAHHHLQ QHQQQHQQHQ QHQQHQPEEP PLHSPTPTAT ATTLPSAAAA  900
GGPGLALPSA LEVKVVVTAN TPDHNGMLAH VYAAKQVAVC CKAPQGAFGG DAPPPDLVQM  960
YVPAVAPPAG GGAAGGGDRG EAAGAAGAAP GAAAGSYPAT VYLIDAAGTV PSLSQGCDVS  1020
SRIAPLNDVC ELAVLVAVAA GAASPASISL PGLLQQHGLL ESEVATSLNL APASSPLWSA  1080
RPLSGDLRQQ AVAEVVYLIP LWHALMRRWT SLPQQLCQAK ADRLLAGQPH RHPQHQQQHQ  1140
QQHHHHQHHQ HQGGQQVGLQ LMVTSQSGSG VTHTLFTPPA GLALPMAYAV MSDMRPPPRR  1200
PVIMKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-06	C3H family protein