PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PNH04048.1
Organism
Tetrabaena socialis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
Family AP2
Protein Properties Length: 489aa    MW: 46246 Da    PI: 4.896
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PNH04048.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.23.6e-123178355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++GV++d k+grW A I +       +++slg f t+e Aa+++++++++++g
  PNH04048.1 31 FRGVCFDWKTGRWQAGIAVL-----GRSVSLGAFATEESAARQYDKCALRIRG 78
                79*****************3.....4*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    
MNQLPAVRPD SISFGNSGLR ASSGPPLPGA FRGVCFDWKT GRWQAGIAVL GRSVSLGAFA  60
TEESAARQYD KCALRIRGFQ ALLNFPLGDY VEEADGSLVL DLRVMAAVPL LPAEVQAAAS  120
AVKAANAAAA AAAAAAGPIA GCSDDATLLS GGNTAAEGPA DAETAVGPAS ERAGPGDSAA  180
HPSSGGGGSS KRAAASLEGG GGGSEVGGAQ AEGRAAKKRR EGQPTGQGPL AAAASQPLPP  240
PSAHPDLGAS AGVAARVSAA GPGAAPSGDP VAALSDPAPA PACGPLSLGA APGAPPHLGL  300
GRRLFQAVAA QLPAAEDPSG GSPTPAGAAA GGGGSRRVQA AQAGGLADAG DGAAAPQPGA  360
SGERAESPSG SGEAVAAAVG GGVAAAAKSA LEGGADAAEA GADASGGGPS GSGGAAAGGG  420
GTAGDGLDGP PPPGWPLHSP QAQKVVSREF AAVTQLMGVG LQEARAMVQR RREPSPDARE  480
LPPDSSRPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.11e-13AP2 family protein