PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH03427.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

C2H2

Protein Properties

Length: 605aa MW: 64648.8 Da PI: 11.326

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH03427.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	421	443	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg +F+ L+rH r H PNH03427.1 421 RCPLCGNTFREAAKLERHFRDlH 443 7*****************98666 PP

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence
MQARGLRCSL SRLQGRHCVA CVTHARRDGA GRSAPTRSPR SAGPVTASLG AGVPDEGLPR 60 EDERGSGRAG TLAGGVPGRL QRSRRPRGEE EFAQQVEEPA QQPPQQQWKS RQTQREEVQE 120 KLQQLAEAQV QPESGNGAHT SRVRSGVGAA ERIAGGRKAS QTSGKSRRVT VQFQLQPPPP 180 QEQQQPQPHQ QQQQEEGLDD QQQQQQQETA AREKPAGRQR VPLFGPTSGG GVLAPAATHS 240 EADVGAAMPA GGAAAAPSPA SAQQRRRPQA NKPADAPMGP GLPAAASAPT PASRRVASGP 300 ARALMGAPPP APEAGTMATR PSAAGPSATA PPATTTPAAA APVSGPPVHV LWDLDNKYPV 360 VLDHRRVVAN IRSALQPYGR VVAIRAYCNH HTLNHVPELW QEAVELGMEH PLKPANPGPI 420 RCPLCGNTFR EAAKLERHFR DLHGREQRKR MHNDKAARRH KETDKHARRG QGTRTGRPGR 480 SGRGGARRAK GRAHALFMEA SRQVLRRPKG FDLAAILAKE GVVVTPVDMG PQMADVALEK 540 DASALLRRQV VPHAPPPVLC LISDDHGFEP LLQLAANRGW DTVVVANTSF QNAGAQMEWS 600 RVVGL

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence

MQARGLRCSL SRLQGRHCVA CVTHARRDGA GRSAPTRSPR SAGPVTASLG AGVPDEGLPR  60
EDERGSGRAG TLAGGVPGRL QRSRRPRGEE EFAQQVEEPA QQPPQQQWKS RQTQREEVQE  120
KLQQLAEAQV QPESGNGAHT SRVRSGVGAA ERIAGGRKAS QTSGKSRRVT VQFQLQPPPP  180
QEQQQPQPHQ QQQQEEGLDD QQQQQQQETA AREKPAGRQR VPLFGPTSGG GVLAPAATHS  240
EADVGAAMPA GGAAAAPSPA SAQQRRRPQA NKPADAPMGP GLPAAASAPT PASRRVASGP  300
ARALMGAPPP APEAGTMATR PSAAGPSATA PPATTTPAAA APVSGPPVHV LWDLDNKYPV  360
VLDHRRVVAN IRSALQPYGR VVAIRAYCNH HTLNHVPELW QEAVELGMEH PLKPANPGPI  420
RCPLCGNTFR EAAKLERHFR DLHGREQRKR MHNDKAARRH KETDKHARRG QGTRTGRPGR  480
SGRGGARRAK GRAHALFMEA SRQVLRRPKG FDLAAILAKE GVVVTPVDMG PQMADVALEK  540
DASALLRRQV VPHAPPPVLC LISDDHGFEP LLQLAANRGW DTVVVANTSF QNAGAQMEWS  600
RVVGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	3e-17	C2H2 family protein