PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PNH03316.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
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Family | LSD | ||||||||
Protein Properties | Length: 71aa MW: 7236.22 Da PI: 8.3818 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 23.4 | 9.9e-08 | 1 | 17 | 9 | 25 |
zf-LSD1 9 sYPrGApsVRCalCdtV 25 +YP GA++VRC+ C ++ PNH03316.1 1 MYPQGASNVRCSRCSHI 17 9*************997 PP | |||||||
2 | zf-LSD1 | 45.8 | 9.7e-15 | 33 | 57 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lLsYPrGA sV+C++C V PNH03316.1 33 CNGCRVLLSYPRGAQSVQCSMCSSV 57 **********************876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 71 aa Download sequence |
MYPQGASNVR CSRCSHITSA PASAGADSAQ IVCNGCRVLL SYPRGAQSVQ CSMCSSVTQV 60 ANIAVGVKAD T |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 4e-14 | LSD family protein |