PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PNH03176.1
Organism
Tetrabaena socialis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
Family SBP
Protein Properties Length: 433aa    MW: 42569.7 Da    PI: 10.1848
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PNH03176.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP34.36.3e-11279309131
                 --SSTT-----TT--HHHHHTT--HHHHT-S CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskap 31 
                 +C+v++C+ dls++keyh+r+++C++h k p
  PNH03176.1 279 MCHVDNCNIDLSNLKEYHQRFRICDFHLKVP 309
                 6**************************9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    
MCGGVALTLS CIASGRRWTY CYCDXGGGAG GSGGGGGGGL RLPIAVDGGG IGRANSGLAA  60
GVVKREMDLE LVPLGTGGGG GPGLLPYRLG SPSGRGALML GPLGGPGGGL GPVDAGMLLA  120
GRAGGVGAGG GGGALTALAR ASSLNGGGGG GGQGLGSAGG SPGRWQQPNS AGALSLALPV  180
GGGGGGGGGA NQGLYDSGLM GLRGMYDNGA GGVKRRRPSN EQEASMELGM EGGGGGGGGG  240
GGGGGGNPRG GGGGRGSRGS RGPDGALQLG GGNKQPSHMC HVDNCNIDLS NLKEYHQRFR  300
ICDFHLKVPG PPAPALAAAP RAPYCSFPCR LLKDINAREA ASAGAVMSSP CKGATRYRVC  360
SRTTFVRMSH MRAPNPGAGT KLRVETAAER NWSLWGRLYT KGRANLTLTR GEKLIFNKGN  420
RDTSNEEIML TID
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.12e-06SBP family protein