PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH02761.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

C3H

Protein Properties

Length: 649aa MW: 67360 Da PI: 7.5245

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH02761.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	3.8e-06	100	120	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C +f + G C++Gd+Ck++H+ PNH02761.1 100 ICFDFTK-GVCSRGDKCKYSHD 120 6777888.*************7 PP
2	zf-CCCH	18.6	3.3e-06	179	200	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +f + G C++G C+++H+ PNH02761.1 179 AICYDFVK-GVCQRGVDCRYSHD 200 58****.***********7 PP
3	zf-CCCH	23.2	1.2e-07	219	240	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C +++r G C++G++Ck++H PNH02761.1 219 EVCYDYLR-GRCNRGATCKYSHN 240 78****.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence
MEQLTQRFDE TSLASSGSSM EAGTLGNGDP LSSGDATAQH SGAASESSSA TENLGCQLDS 60 GCGSGSLEYA QQTRSQHEQQ SRSQHEAHEG LTQQEGKSQI CFDFTKGVCS RGDKCKYSHD 120 LATIVHFNSK EKGICFDYLR NQCHRGLLCR FSHDLSNIAQ QCQVYNNGAK ENKGAKPNAI 180 CYDFVKGVCQ RGVDCRYSHD LSLIARMARG GSAQPKAGEV CYDYLRGRCN RGATCKYSHN 240 IAFLAAPGFL GSDTPADGAP MPAQASGPGM HAGGPPMGGM PLGHGSGGYP VNMGGMHGGM 300 PQRLSPALSA DQATFNHVMA AAGQGAVNQM FAMQQHQHQA NSMAAAEAAE RRRRSGSISG 360 EASNEALSAN DQPPGSWHGM PPALPKNNMG GMAQHHQAAM MNSMAVQQHQ QRMAHMAHQG 420 ANNMHNSHIH GHVPVLGMPG GPGQHHGVEG FGHHHPGGGM SSGMFGKAPG MGHFGGPEQA 480 GHGMRRPPLH PGHMPAEIAA LFGGGMPENP GVFAEALAVA KAQAQAQHQA QNQSARMSNG 540 SMLSSMGSGG GGLPSMSGGG GPAMPQPIPG RDNMLAPHGG EYYAASNASF ASNGPQPGGG 600 VGGGGHPMVE HGHLSRSAPT GGPLHPNNVN PDLLPMIKEI WSKPGAVLV

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence

MEQLTQRFDE TSLASSGSSM EAGTLGNGDP LSSGDATAQH SGAASESSSA TENLGCQLDS  60
GCGSGSLEYA QQTRSQHEQQ SRSQHEAHEG LTQQEGKSQI CFDFTKGVCS RGDKCKYSHD  120
LATIVHFNSK EKGICFDYLR NQCHRGLLCR FSHDLSNIAQ QCQVYNNGAK ENKGAKPNAI  180
CYDFVKGVCQ RGVDCRYSHD LSLIARMARG GSAQPKAGEV CYDYLRGRCN RGATCKYSHN  240
IAFLAAPGFL GSDTPADGAP MPAQASGPGM HAGGPPMGGM PLGHGSGGYP VNMGGMHGGM  300
PQRLSPALSA DQATFNHVMA AAGQGAVNQM FAMQQHQHQA NSMAAAEAAE RRRRSGSISG  360
EASNEALSAN DQPPGSWHGM PPALPKNNMG GMAQHHQAAM MNSMAVQQHQ QRMAHMAHQG  420
ANNMHNSHIH GHVPVLGMPG GPGQHHGVEG FGHHHPGGGM SSGMFGKAPG MGHFGGPEQA  480
GHGMRRPPLH PGHMPAEIAA LFGGGMPENP GVFAEALAVA KAQAQAQHQA QNQSARMSNG  540
SMLSSMGSGG GGLPSMSGGG GPAMPQPIPG RDNMLAPHGG EYYAASNASF ASNGPQPGGG  600
VGGGGHPMVE HGHLSRSAPT GGPLHPNNVN PDLLPMIKEI WSKPGAVLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	6e-06	C3H family protein