PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH02683.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

AP2

Protein Properties

Length: 534aa MW: 55299.1 Da PI: 5.2421

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH02683.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.5	1.1e-10	339	384	1	51
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 s y+GV wd+k+++W+A+I + ng +lg++ t e+Aa+a +aa + PNH02683.1 339 SVYRGVVWDEKQNQWRAQIVE---NG--GISYLGYYPTQEDAARAFDAAVL 384 78**************555...55..8889**************976 PP
2	AP2	38.2	3.7e-12	421	472	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV+w++ +WvA ++d ++ ++g++ ++e+Aa+a+++ ++++ g PNH02683.1 421 SQYKGVSWNSACSKWVAVLWD----ReLKRARHIGSYESEEDAARAYDKEALRMLG 472 78*****************....3344888*******************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
RGEARALHAV EPAGQLEXPP CSPAPPQSSL ITGIHNAAGM SPLPSLLGLS SPFLDSLVSA 60 SPNAQLAAMF AQLAQSTRGG QTPALLDALT PGAVGGWPDS TRSGGSTLRQ LLELHDPGSL 120 PMIGEGELDE AALADALLSR GFFAGLPTGR RGSVTSGPGG GVFGSGREGG EGEDEGGLGA 180 GEMSSEQLAG MGLQSPSALG MGGNGHVLYK GVHYDKEADT WQVVVFDGAR YTVVGEYGNE 240 LEALVANELL SPAQPMPGNL HTLLGGGGSG GGAGGEADGG GGDDEDFVLG SVRAEVASTG 300 RGRGRGRGRG AAGPGPMVAG AGPLVPAPEI IGPDGKRESV YRGVVWDEKQ NQWRAQIVEN 360 GGISYLGYYP TQEDAARAFD AAVLRSGSKE LLNFPPAAKP ANPHPGPKAR GPRAPGTRVT 420 SQYKGVSWNS ACSKWVAVLW DRELKRARHI GSYESEEDAA RAYDKEALRM LGPEAGLNFR 480 ESAADYLAEI GADGVPEGTH NSNKGSSQYR GVSWHERSQR WEVRVWGGGK QHFI

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

RGEARALHAV EPAGQLEXPP CSPAPPQSSL ITGIHNAAGM SPLPSLLGLS SPFLDSLVSA  60
SPNAQLAAMF AQLAQSTRGG QTPALLDALT PGAVGGWPDS TRSGGSTLRQ LLELHDPGSL  120
PMIGEGELDE AALADALLSR GFFAGLPTGR RGSVTSGPGG GVFGSGREGG EGEDEGGLGA  180
GEMSSEQLAG MGLQSPSALG MGGNGHVLYK GVHYDKEADT WQVVVFDGAR YTVVGEYGNE  240
LEALVANELL SPAQPMPGNL HTLLGGGGSG GGAGGEADGG GGDDEDFVLG SVRAEVASTG  300
RGRGRGRGRG AAGPGPMVAG AGPLVPAPEI IGPDGKRESV YRGVVWDEKQ NQWRAQIVEN  360
GGISYLGYYP TQEDAARAFD AAVLRSGSKE LLNFPPAAKP ANPHPGPKAR GPRAPGTRVT  420
SQYKGVSWNS ACSKWVAVLW DRELKRARHI GSYESEEDAA RAYDKEALRM LGPEAGLNFR  480
ESAADYLAEI GADGVPEGTH NSNKGSSQYR GVSWHERSQR WEVRVWGGGK QHFI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	301	310	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	3e-12	AP2 family protein