PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH01884.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

MYB

Protein Properties

Length: 623aa MW: 67306.3 Da PI: 9.8523

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH01884.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27	1.1e-08	49	96	2	46
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46 ++WT++E + lv +v+ + +W +++ + gRt+kqc+++w + PNH01884.1 49 KAWTQQETDYLVSVVAATSSSmesiDWQVVSQQLA-GRTGKQCREKWKN 96 58***************99**********.*********87 PP
2	Myb_DNA-binding	32.1	2.7e-10	104	145	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 + +W+ E+ l+ a+ q+G++ W+ +a++++ +R ++ +k+rw PNH01884.1 104 KEPWSLKEEYVLALAHYQYGNR-WSEVAHYLP-TRPENTIKNRW 145 679*****************.*****.********* PP

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence
MNRRYIESYD DTDTDDSTPQ RSRRPRGGAS RKRRSSDDSN SKLRKEPSKA WTQQETDYLV 60 SVVAATSSSM ESIDWQVVSQ QLAGRTGKQC REKWKNDLRP NINKEPWSLK EEYVLALAHY 120 QYGNRWSEVA HYLPTRPENT IKNRWWVAGG SGMGGDLWGQ FDLQPPTPRG GGGGQQQQYQ 180 QLQPQQQQQL QHRHRQQQRD QAHAHRLEQD MLHSLQQQQQ SHAATAPPQM HHAPPVPRAY 240 PHPVVTTTTV TSLPPQAQAQ AQGQAHGGAQ HRPHSSGHGF PAQQHQQGLT QPSAQQEARG 300 PPLGHPYAHL MAPHSGLAYP QQLQARDSDS HQLPLQLPGP PRGSLPLPPM PAPLQQQQQP 360 GQQQQLHDME QQQARRLPPP HPASVYGYGP SPPYGSPVRQ SPSGKHGMPQ PYAGALPQPG 420 APYGAGGLPY MVPMAVRSGG GLYKTAGAGR PGAPMAPEML PYPLYGMPPG PPPHAQPAVY 480 MDPGQHYARQ PHPQQQLPLP LGSAGGAVHG PAHLAAQRGP PPPSYMYDHA PGMPYGMQLQ 540 HRQQLAPVKT EPLMYGNMDA ANTVAPIPGG ACAGTPPAGG GGAPPRAALG SSTPPAFPAP 600 VAAVAAATSP VPVMGRMYSG PLQ

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence

MNRRYIESYD DTDTDDSTPQ RSRRPRGGAS RKRRSSDDSN SKLRKEPSKA WTQQETDYLV  60
SVVAATSSSM ESIDWQVVSQ QLAGRTGKQC REKWKNDLRP NINKEPWSLK EEYVLALAHY  120
QYGNRWSEVA HYLPTRPENT IKNRWWVAGG SGMGGDLWGQ FDLQPPTPRG GGGGQQQQYQ  180
QLQPQQQQQL QHRHRQQQRD QAHAHRLEQD MLHSLQQQQQ SHAATAPPQM HHAPPVPRAY  240
PHPVVTTTTV TSLPPQAQAQ AQGQAHGGAQ HRPHSSGHGF PAQQHQQGLT QPSAQQEARG  300
PPLGHPYAHL MAPHSGLAYP QQLQARDSDS HQLPLQLPGP PRGSLPLPPM PAPLQQQQQP  360
GQQQQLHDME QQQARRLPPP HPASVYGYGP SPPYGSPVRQ SPSGKHGMPQ PYAGALPQPG  420
APYGAGGLPY MVPMAVRSGG GLYKTAGAGR PGAPMAPEML PYPLYGMPPG PPPHAQPAVY  480
MDPGQHYARQ PHPQQQLPLP LGSAGGAVHG PAHLAAQRGP PPPSYMYDHA PGMPYGMQLQ  540
HRQQLAPVKT EPLMYGNMDA ANTVAPIPGG ACAGTPPAGG GGAPPRAALG SSTPPAFPAP  600
VAAVAAATSP VPVMGRMYSG PLQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	30	35	SRKRRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	1e-22	MYB family protein