PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PNH00417.1
Organism
Tetrabaena socialis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
Family C3H
Protein Properties Length: 770aa    MW: 77991.1 Da    PI: 6.764
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PNH00417.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.4e-08511531425
                 ---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                 + Crf+++ G+C+ G+rC+FaH
  PNH00417.1 511 RVCRFHLQ-GYCRDGERCRFAH 531
                 68**9999.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    
MEPATSGAGQ PPAEGAYGHL DTEDKRVKEL TEGILYDFLP AALNVMLPRC EEELDADRCR  60
AVASAALAVS ALMNAPPGFL EFLLCVPWRK LSQLYPKSDT IDKLVSNLQV TDEERRKLVN  120
TRIEPALMGS VLDFLYKDKH LDSVPPLLQL TPVNPLQPAL ARVVYVHICL LLETEAQASP  180
TRSLVWRAEQ CLREWDRLEK AGLTQGAGVL DPRHVVSLQL WAKTADSDLY LAEALHGQAL  240
PPTKSLQEVV VGAVTYSPGG LPILGRPVSA EVVAALEQAI TLSSLPSPLL AHIVRSVVAN  300
ATAELGAAAR LRELVGAKGA ALGGGGTSEA AAALSEALRA AEPFRARLGP ELEAAQELRG  360
KWMQRASAVE KLEAAVDEGR PLGLGGGGGG MGMGGPGMVT GRQSLQLAPG VGSQQGGGGG  420
GGGGVVRSSF WAPPAFQASA ELGAEGGGGG GSVQQAVDWA AAAQGDLGAI QMLHLSQQAV  480
AGLAGGGGGG MLRGGSGGAG GAGGGGSSAS RVCRFHLQGY CRDGERCRFA HAGGGAGGGG  540
GGPAAAAVQL LQLPSPQHAH MQGGGGSATA GVGQSSAVGS FAFGAPGAEA FAPMGGLGRG  600
GGGAGGGGGE ALEALGGSAP RSPRMRPGSA TALQAGSMGG LPAAIALLER SHQLAGAAQQ  660
AQQQAQAQGH HLSLHYHHYN PHLQQQLQQQ QQQQQAVQLR DSATGATYTA VLTVSPPSPG  720
GGGMLAPALP SPTAHQQQQQ LVLPDDLTFS PPSNPSTPGV AVGMHAQPRK