PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PNH00394.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
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Family | SBP | ||||||||
Protein Properties | Length: 188aa MW: 20366.7 Da PI: 9.4186 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 75.5 | 8.4e-24 | 74 | 149 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+ +C dls+ak y rr+ vCe h ka+ vl++g + rfCqqC +f l++f +krsC++r ++ n rrrk+++ PNH00394.1 74 CQA-SCGRDLSDAKLYLRRYSVCEPHFKAECVLLAGGRFRFCQQCNKFQPLDNFTGSKRSCKSRSEDRNLRRRKQRT 149 775.7*********************************************************************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence |
MSVPPDQARA DAEAYANAAA AVAAAAAAGM GDHHNNLSQV LSLQHHVDHG DDSGGGQQER 60 RPRKLRKPND VARCQASCGR DLSDAKLYLR RYSVCEPHFK AECVLLAGGR FRFCQQCNKF 120 QPLDNFTGSK RSCKSRSEDR NLRRRKQRTD ERTNATDGDG DGGDTLPGRL LKGGHGLGGL 180 TLPSRAAL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 65 | ERRPRKL |
2 | 139 | 145 | DRNLRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 7e-18 | SBP family protein |