PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNG99200.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

C3H

Protein Properties

Length: 348aa MW: 32838.5 Da PI: 7.2203

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNG99200.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27	7.5e-09	259	280	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++a+tG C++G+ C + H+p PNG99200.1 259 CKYWAATGRCPRGAGCLYDHPP 280 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
GDTVRVRGVY EHARSHTFVV REIAVTESWR ERNPDSSFTP QPGPRPPAPQ PSACAGPATA 60 AAAPPPRSAA APSAASGLPD HAREAAGGVA VGCGTGNSVV TGGHGAVEGA ADAAGAAVAG 120 AAARGLVATA APAAGAAAAA QAATAAAAAA ADAVAVGTAA QAAAASDGGG TSSTAGLPAA 180 ASSEARRPRG KRRAEGDADG SESDGSSGSG SGSDGGRSSG DGEDGGGGGG GGDRGGLAAE 240 ARGGPAATSG GGGGAAGVCK YWAATGRCPR GAGCLYDHPP LRGGTDGAHQ QYVASRRHDR 300 LAAAAGQGYV HEAGDAAKSR RAAVLADWLL ATYGKERLSS GTGVLDVA

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

GDTVRVRGVY EHARSHTFVV REIAVTESWR ERNPDSSFTP QPGPRPPAPQ PSACAGPATA  60
AAAPPPRSAA APSAASGLPD HAREAAGGVA VGCGTGNSVV TGGHGAVEGA ADAAGAAVAG  120
AAARGLVATA APAAGAAAAA QAATAAAAAA ADAVAVGTAA QAAAASDGGG TSSTAGLPAA  180
ASSEARRPRG KRRAEGDADG SESDGSSGSG SGSDGGRSSG DGEDGGGGGG GGDRGGLAAE  240
ARGGPAATSG GGGGAAGVCK YWAATGRCPR GAGCLYDHPP LRGGTDGAHQ QYVASRRHDR  300
LAAAAGQGYV HEAGDAAKSR RAAVLADWLL ATYGKERLSS GTGVLDVA