PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO03954.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

CPP

Protein Properties

Length: 522aa MW: 57147.2 Da PI: 8.2962

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO03954.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	43.2	8e-14	132	170	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+C+C++s+Clk+YCeCf ag +C+ C+C +C+N+ + POO03954.1 132 KQKQCKCRNSRCLKLYCECFTAGIYCDG-CNCLNCHNNVD 170 89************************.******986 PP
2	TCR	50.9	3.1e-16	216	254	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k++kgCnC+ks ClkkYCeCf+a+ Cse+CkC+dCkN POO03954.1 216 KHNKGCNCRKSGCLKKYCECFQANILCSENCKCSDCKNF 254 589***********************************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MEQTETISDF PVKKLARQLD FTAACRASSA NAVVREKLEP ESQPLSVAPP IAQLQLQLKS 60 QEQTIPSPPQ AQAQRQLTQS PLQARPNLVP VSQPRIPHPV HKLPTQTMSL SVKQESPKSR 120 PWIEAKDGTP KKQKQCKCRN SRCLKLYCEC FTAGIYCDGC NCLNCHNNVD NDAARKEAIA 180 TILERNPNAF RPKIDSSPNE SRDGREEAGD TQAAGKHNKG CNCRKSGCLK KYCECFQANI 240 LCSENCKCSD CKNFDGSDER RALFHEDHTA VYRQQAANAA INGAVGSSGY GTPLTSRKRK 300 SHELFFGHLT RDQSISITGR GQQVNHPIAS VSSPLVPVPV RHNAAALGSS KITYRSPLAD 360 VFQPRDVKNF CSFLVAVSGE AARAFAESRQ TENGNKTPIA SSTQRSEDSR EENDVQNAGD 420 NHLLEGKKAD RDGTSDSRSD ACDVQIDEPM SPGTLALMCD EKDTMFMAAE LPNGGKTRCG 480 NVTRKSSGEN KCTELYAEQE SSILTVLCNF LKKVITRGSI KG

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MEQTETISDF PVKKLARQLD FTAACRASSA NAVVREKLEP ESQPLSVAPP IAQLQLQLKS  60
QEQTIPSPPQ AQAQRQLTQS PLQARPNLVP VSQPRIPHPV HKLPTQTMSL SVKQESPKSR  120
PWIEAKDGTP KKQKQCKCRN SRCLKLYCEC FTAGIYCDGC NCLNCHNNVD NDAARKEAIA  180
TILERNPNAF RPKIDSSPNE SRDGREEAGD TQAAGKHNKG CNCRKSGCLK KYCECFQANI  240
LCSENCKCSD CKNFDGSDER RALFHEDHTA VYRQQAANAA INGAVGSSGY GTPLTSRKRK  300
SHELFFGHLT RDQSISITGR GQQVNHPIAS VSSPLVPVPV RHNAAALGSS KITYRSPLAD  360
VFQPRDVKNF CSFLVAVSGE AARAFAESRQ TENGNKTPIA SSTQRSEDSR EENDVQNAGD  420
NHLLEGKKAD RDGTSDSRSD ACDVQIDEPM SPGTLALMCD EKDTMFMAAE LPNGGKTRCG  480
NVTRKSSGEN KCTELYAEQE SSILTVLCNF LKKVITRGSI KG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	296	301	SRKRKS
2	298	302	KRKSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-133	CPP family protein