PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO03760.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

HD-ZIP

Protein Properties

Length: 327aa MW: 35630.2 Da PI: 7.2249

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO03760.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.7e-19	165	219	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Le+ F+ + +++ +++++LA++l+L rqV vWFqNrRa+ k POO03760.1 165 RKKLRLTKEQSAVLEDSFKDHTTLNPKQKQDLARQLNLRPRQVEVWFQNRRARTK 219 78889************************************************98 PP
2	HD-ZIP_I/II	123.3	1.1e-39	165	253	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq+++LE+sF+ +++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E dye Lk+++++l+een+rL+ke ++L+ + POO03760.1 165 RKKLRLTKEQSAVLEDSFKDHTTLNPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEADYELLKKCCETLTEENKRLQKELQDLK-S 253 69*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MGSNGVFNTG LGLGLGSSHH QYSPADHHHH HHHHDQENKK KILWLKYDHL LPSLTLGRPS 60 SSSSDDHHDD NHIVDQAYQT TEVSAHDVHG VGASNSHSAV SSFSNSSTSL KRDRDHLGGG 120 GGGGGSGGGS GGGGGEDVEV EIELERFSGS RVSTTEEDED QASPRKKLRL TKEQSAVLED 180 SFKDHTTLNP KQKQDLARQL NLRPRQVEVW FQNRRARTKL KQTEADYELL KKCCETLTEE 240 NKRLQKELQD LKSLKLTAPL LLQFPSSTSA TLTICPSCER ICGNGGDGPS STSPFLKIGK 300 KPHNFSNMPF TSTNTTTTST PHPSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	222	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	5e-57	HD-ZIP family protein