PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO03736.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

AP2

Protein Properties

Length: 715aa MW: 78327.9 Da PI: 7.1615

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO03736.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.8	4.1e-16	345	404	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g POO03736.1 345 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 404 78*****************988886678446***********************98 PP
2	AP2	45.1	2.5e-14	449	498	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g POO03736.1 449 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 498 9*************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence
MKSMNDHNSN NNNINNWLGF SLSPQMKMEL TSSSSSTTTT APSVSNSVPT SFYLSPTHLT 60 SSGLCYGIGT ENAAAFHSPL SVMPLKSDGS LCIMEALSRS QPEVMVPSSS PKLEDFLGGA 120 TMGSHDQYGS QDREAMALSL DSIYYNQNAE SSETNRDHHH QQHQHHHPLD LLQQPFRQQD 180 QPIPYYSGIP CHGIYQTTPL GEDHQESKQI HIPDCTTTTT TTTNSQISQM PEVDHHSGMP 240 CLKNWVVARQ YSGQHSVDQA GNLVDVDTGV GCGSVGGISC GELQSLTLSM SPGSQSSCIT 300 APRQISPTGI ECVAMVETKK RGSGKIGQKQ TVHRKSIDTF GQRTSQYRGV TRHRWTGRYE 360 AHLWDNSCKK EGQTRKGRQV YLGGYDMEEK AARAYDLAAL KYWGPSTHIN FPLENYQAEL 420 EEMKKMTRQE YVAHLRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS 480 TQEEAAEAYD VAAIKFRGVN AVTNFDITRY DVEKIMASNT LLAGELARRN KDIMEPIITD 540 QTVDYNSSQQ INGCSEASHI ESHNTNNNTT NGPDWKMGLY QSSPCLDQSL DQKNYRNASS 600 FSMALQDLIG IESVNSSPNT TTTAHHQLAA PPGTHFSNPS SLVTSLSSSR EASPDKSSGP 660 TMAFARPPLA SKFISPTSGG VSSWFPSAAA AAQLRPAAAI SMGHLPVFAA WNIDA

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence

MKSMNDHNSN NNNINNWLGF SLSPQMKMEL TSSSSSTTTT APSVSNSVPT SFYLSPTHLT  60
SSGLCYGIGT ENAAAFHSPL SVMPLKSDGS LCIMEALSRS QPEVMVPSSS PKLEDFLGGA  120
TMGSHDQYGS QDREAMALSL DSIYYNQNAE SSETNRDHHH QQHQHHHPLD LLQQPFRQQD  180
QPIPYYSGIP CHGIYQTTPL GEDHQESKQI HIPDCTTTTT TTTNSQISQM PEVDHHSGMP  240
CLKNWVVARQ YSGQHSVDQA GNLVDVDTGV GCGSVGGISC GELQSLTLSM SPGSQSSCIT  300
APRQISPTGI ECVAMVETKK RGSGKIGQKQ TVHRKSIDTF GQRTSQYRGV TRHRWTGRYE  360
AHLWDNSCKK EGQTRKGRQV YLGGYDMEEK AARAYDLAAL KYWGPSTHIN FPLENYQAEL  420
EEMKKMTRQE YVAHLRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS  480
TQEEAAEAYD VAAIKFRGVN AVTNFDITRY DVEKIMASNT LLAGELARRN KDIMEPIITD  540
QTVDYNSSQQ INGCSEASHI ESHNTNNNTT NGPDWKMGLY QSSPCLDQSL DQKNYRNASS  600
FSMALQDLIG IESVNSSPNT TTTAHHQLAA PPGTHFSNPS SLVTSLSSSR EASPDKSSGP  660
TMAFARPPLA SKFISPTSGG VSSWFPSAAA AAQLRPAAAI SMGHLPVFAA WNIDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-143	AP2 family protein