PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO03516.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 431aa MW: 47590.7 Da PI: 7.1531

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO03516.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51	3.4e-16	126	171	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ POO03516.1 126 RGHWRPAEDAKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 171 899***************************.*********996 PP
2	Myb_DNA-binding	56.9	4.6e-18	178	221	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ POO03516.1 178 RRAFTEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 221 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MAKNCVIYNT EENQNSSGSS SSPLSCYSSS SYSQYCSSMG MVYADMGSLS LSPNLGVVSS 60 PESYNISKCS EVENRRALWG FPLMEGGSKG SDSSEKANLD DENLNENVMI STGKETDSGQ 120 SKLCARGHWR PAEDAKLKEL VALYGPQNWN LIAEKLEGRS GKSCRLRWFN QLDPRINRRA 180 FTEEEEERLM QAHRIYGNKW AMIARLFPGR TDNAVKNHWH VIMARKYREQ SSAYRRRKLS 240 QSIYRRMEEN SSFVVCGEAI PRAEPPLPYC LNNLRNGGLE NVSAYPYGAF NGGNSNGGSG 300 VPYGLNFPPQ MTSCGEAIIS SGKVQSANTG FCVQETPYEF FPGANNRSWE YMRSNIDEAQ 360 TQSGGVVLHQ NSNLYQNFHQ SFSNSTVSTS QASAGDRPSS SGAAEQHATS HFDKIGTNPP 420 PFIDFLGVGA M

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MAKNCVIYNT EENQNSSGSS SSPLSCYSSS SYSQYCSSMG MVYADMGSLS LSPNLGVVSS  60
PESYNISKCS EVENRRALWG FPLMEGGSKG SDSSEKANLD DENLNENVMI STGKETDSGQ  120
SKLCARGHWR PAEDAKLKEL VALYGPQNWN LIAEKLEGRS GKSCRLRWFN QLDPRINRRA  180
FTEEEEERLM QAHRIYGNKW AMIARLFPGR TDNAVKNHWH VIMARKYREQ SSAYRRRKLS  240
QSIYRRMEEN SSFVVCGEAI PRAEPPLPYC LNNLRNGGLE NVSAYPYGAF NGGNSNGGSG  300
VPYGLNFPPQ MTSCGEAIIS SGKVQSANTG FCVQETPYEF FPGANNRSWE YMRSNIDEAQ  360
TQSGGVVLHQ NSNLYQNFHQ SFSNSTVSTS QASAGDRPSS SGAAEQHATS HFDKIGTNPP  420
PFIDFLGVGA M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	6e-77	MYB family protein