PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO03269.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family LSD
Protein Properties Length: 175aa    MW: 18480.5 Da    PI: 8.4394
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO03269.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.11.4e-13731125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                C+gCr +L YPrGA++V+Ca+C+t+
  POO03269.1  7 CNGCRSILLYPRGATNVCCAICNTI 31
                ***********************97 PP

2zf-LSD149.76e-164670125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                CggCrtlL+Y+rGA+sVRC++C+tV
  POO03269.1 46 CGGCRTLLMYTRGATSVRCSCCHTV 70
                ************************9 PP

3zf-LSD144.72.2e-1484108125
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                 Cg C+t+L+YP+GApsV+Ca+C+ V
  POO03269.1  84 CGRCQTTLMYPYGAPSVKCAVCQYV 108
                 ***********************87 PP

Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MQSQLVCNGC RSILLYPRGA TNVCCAICNT ITSVPPPGME MAQLICGGCR TLLMYTRGAT  60
SVRCSCCHTV NLAPGSNQVA HVNCGRCQTT LMYPYGAPSV KCAVCQYVTN VGMGNMRVPI  120
PVHRPNGTNP GTMPSTSAPM PHSQSQTVVV ENPMSVDESG KLVSNVVVGV TTEKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.23e-76LSD family protein