PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO03269.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

LSD

Protein Properties

Length: 175aa MW: 18480.5 Da PI: 8.4394

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO03269.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.1	1.4e-13	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+Ca+C+t+ POO03269.1 7 CNGCRSILLYPRGATNVCCAICNTI 31 ***********************97 PP
2	zf-LSD1	49.7	6e-16	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV POO03269.1 46 CGGCRTLLMYTRGATSVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	44.7	2.2e-14	84	108	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg C+t+L+YP+GApsV+Ca+C+ V POO03269.1 84 CGRCQTTLMYPYGAPSVKCAVCQYV 108 ***********************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence
MQSQLVCNGC RSILLYPRGA TNVCCAICNT ITSVPPPGME MAQLICGGCR TLLMYTRGAT 60 SVRCSCCHTV NLAPGSNQVA HVNCGRCQTT LMYPYGAPSV KCAVCQYVTN VGMGNMRVPI 120 PVHRPNGTNP GTMPSTSAPM PHSQSQTVVV ENPMSVDESG KLVSNVVVGV TTEKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	3e-76	LSD family protein