PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO02682.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family B3
Protein Properties Length: 251aa    MW: 28133.3 Da    PI: 6.5145
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO02682.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.82.9e-111584499
                -EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 44 rsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                r+W+v++++  + ++    l++GW  F+++n+L++gD+++F l + ++++++v +fr 
  POO02682.1  1 RTWSVNFSFIEHEKMltARLKSGWITFARDNNLEVGDVCIFVLLEARKTTFKVVIFRV 58
                79*****99888888778999*********************9988888899999985 PP
2B358.89.7e-19144240197
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 ffk+l++  +l s+ l lp kf++++ +++ +   + l  ++grsW+ kl+++ + ++     l kGW eFvk+n+L  gD++vFkl +r+  ++ v++
  POO02682.1 144 FFKILIQRTYLGSRYLQLPIKFVNAYIKNQ-G--GVFLSVPNGRSWDAKLRITPQESMncvARLCKGWTEFVKDNNLGIGDVCVFKLLDRTAISFEVSI 239
                 99*********************9995553.3..39999***********887777776556666*********************9887776667776 PP

                 E CS
          B3  97 f 97 
                 +
  POO02682.1 240 V 240
                 5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
RTWSVNFSFI EHEKMLTARL KSGWITFARD NNLEVGDVCI FVLLEARKTT FKVVIFRVNG  60
NCPIAPAHED GAIQVKAEEI LTNETLSGGA INGETGEPSS LESFPAKQAS GCISNPLKSS  120
QLPLSITERD RILDSIPFES EEPFFKILIQ RTYLGSRYLQ LPIKFVNAYI KNQGGVFLSV  180
PNGRSWDAKL RITPQESMNC VARLCKGWTE FVKDNNLGIG DVCVFKLLDR TAISFEVSIV  240
RFAEYDCLPW S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-11B3 family protein