PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO02588.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

HD-ZIP

Protein Properties

Length: 211aa MW: 24592.9 Da PI: 7.6523

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO02588.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	5e-19	54	108	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ POO02588.1 54 KKRKLSAEQVNLLEINFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 108 45689************************************************95 PP
2	HD-ZIP_I/II	121.6	3.8e-39	54	145	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+ls+eqv+lLE +F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+++ e++rLe+e +L+e+l++ POO02588.1 54 KKRKLSAEQVNLLEINFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKQHDSVVVEKCRLESELLKLKEQLSD 145 9***************************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MPTTMNNHVE DHMVLFSQLY PGVYSQMVPQ QGEPKPKRRR KKNKSGSEAS ALAKKRKLSA 60 EQVNLLEINF GSEHKLESER KDRLASELGL DPRQVAVWFQ NRRARWKNKK LEEEYSTLKK 120 QHDSVVVEKC RLESELLKLK EQLSDAEKEI QRLAERVDSA SSNSPSSSLS MEAAMDPPFL 180 GEYRVVEEYD DVFYVPQNNY IYGMEWMNLY M

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	36	43	PKRRRKKN
2	37	56	KRRRKKNKSGSEASALAKKR
3	37	57	KRRRKKNKSGSEASALAKKRK
4	38	57	KRRRKKNKSGSEASALAKKR
5	38	58	KRRRKKNKSGSEASALAKKRK
6	39	59	KRRRKKNKSGSEASALAKKRK
7	40	60	KRRRKKNKSGSEASALAKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	9e-62	HD-ZIP family protein