PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO01791.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 349aa MW: 37256.3 Da PI: 6.913

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO01791.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.00097	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H POO01791.1 156 YQCKTCDRCFPSFQALGGHRASH 178 9***********99999998887 PP
2	zf-C2H2	12.5	0.00046	242	264	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cg F++ L H+r+H POO01791.1 242 HECAICGAEFTSGQALGGHMRRH 264 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MEAQEELVNN KGDHHDDHGH DHDRMVMMRQ NMMMMMIKGK RTKRPRAAPA PLLISPPTLT 60 NMASSSSSTG GGGGGGGGCV LTSPTTSSTE LTETVDTTEE EEDMANCLIL LAQGYHGRRT 120 RSPDPDFQAT TAAVAGAINK SGGGGGGGGG GGLYVYQCKT CDRCFPSFQA LGGHRASHKK 180 PKTTLSNTDQ EKKTLSFHVV VDEDEQLVNA STTATTSTAI SLHTSNDTSN NKNSSSNKSK 240 VHECAICGAE FTSGQALGGH MRRHRTASFM NAQTTVTTTT TTTSFTSSTT SASHDQPQEL 300 KKIKPRNVLA LDLNLPAPDD QDRRETKFPF AAEEQIIVFS ASSLVDCHY

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MEAQEELVNN KGDHHDDHGH DHDRMVMMRQ NMMMMMIKGK RTKRPRAAPA PLLISPPTLT  60
NMASSSSSTG GGGGGGGGCV LTSPTTSSTE LTETVDTTEE EEDMANCLIL LAQGYHGRRT  120
RSPDPDFQAT TAAVAGAINK SGGGGGGGGG GGLYVYQCKT CDRCFPSFQA LGGHRASHKK  180
PKTTLSNTDQ EKKTLSFHVV VDEDEQLVNA STTATTSTAI SLHTSNDTSN NKNSSSNKSK  240
VHECAICGAE FTSGQALGGH MRRHRTASFM NAQTTVTTTT TTTSFTSSTT SASHDQPQEL  300
KKIKPRNVLA LDLNLPAPDD QDRRETKFPF AAEEQIIVFS ASSLVDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	2e-32	C2H2 family protein