PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO01633.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 585aa MW: 63238.3 Da PI: 9.6382

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO01633.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.6e-05	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H POO01633.1 83 FICEICNKGFQRDQNLQLHRRGH 105 89*******************88 PP
2	zf-C2H2	12.5	0.00045	160	182	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ POO01633.1 160 WKCEKCSKKYAVQSDWKAHSKTC 182 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence
MAGTEGFSVP SSHINGWFGH HQQEPNPNDT STSPKPNPNP NPASKKKRNL PGTPGNYIYF 60 LILNPDAEVI ALSPKTLMAT NRFICEICNK GFQRDQNLQL HRRGHNLPWK LKQRTNKDQI 120 KKKVYICPEK TCVHHDPARA LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA VQSDWKAHSK 180 TCGTREYKCD CGTLFSRKDS FITHRAFCDA LAEESARLTS VVSTNLSFGN NNVDHSNMIN 240 INNSSSTTST MANIPHHPTD HILPPGLGAS GCGVQDYGPN SHGFQLQDFN INGDQFHKPR 300 LSLWLNQVNN SNIPVDHIQG NSNFYNVPEM VQNMGSATST TTLFGSSSSS MSSYGNSNHL 360 VGFDNQKSAS TTIPNLSLSP LQVGLKEEGA NRLYSSSSEK AQNSSSKPIA PMSATALLQK 420 AAQMGSTRSS NNPSFFGSSS SGVMIMSSSS SSSSSSSSSV SATTPTTTTT TSTTTMSFNS 480 LNQNRNVNVA NMVDHHHGYL DGSNLSNISS NGLNQLVIMQ KSGGTIGKAS DQPVLKLINP 540 SSNGIENGLT RDFLGSGSGG EISQRQFLSH SIGSAMGLSQ FTGNH

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence

MAGTEGFSVP SSHINGWFGH HQQEPNPNDT STSPKPNPNP NPASKKKRNL PGTPGNYIYF  60
LILNPDAEVI ALSPKTLMAT NRFICEICNK GFQRDQNLQL HRRGHNLPWK LKQRTNKDQI  120
KKKVYICPEK TCVHHDPARA LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA VQSDWKAHSK  180
TCGTREYKCD CGTLFSRKDS FITHRAFCDA LAEESARLTS VVSTNLSFGN NNVDHSNMIN  240
INNSSSTTST MANIPHHPTD HILPPGLGAS GCGVQDYGPN SHGFQLQDFN INGDQFHKPR  300
LSLWLNQVNN SNIPVDHIQG NSNFYNVPEM VQNMGSATST TTLFGSSSSS MSSYGNSNHL  360
VGFDNQKSAS TTIPNLSLSP LQVGLKEEGA NRLYSSSSEK AQNSSSKPIA PMSATALLQK  420
AAQMGSTRSS NNPSFFGSSS SGVMIMSSSS SSSSSSSSSV SATTPTTTTT TSTTTMSFNS  480
LNQNRNVNVA NMVDHHHGYL DGSNLSNISS NGLNQLVIMQ KSGGTIGKAS DQPVLKLINP  540
SSNGIENGLT RDFLGSGSGG EISQRQFLSH SIGSAMGLSQ FTGNH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	2e-96	C2H2 family protein