PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | POO01525.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 177aa MW: 19602 Da PI: 4.4488 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.8 | 4.4e-21 | 10 | 55 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +i+ k nr v fskRrng++KKA+ELS L++a+vav+++s++g+ y POO01525.1 10 KISKKENRLVCFSKRRNGLFKKAHELSALTGAQVAVLVLSESGRPY 55 799***************************************9855 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence |
MVKRRINIEK ISKKENRLVC FSKRRNGLFK KAHELSALTG AQVAVLVLSE SGRPYFHSSS 60 PSFVAQFLTP DFSLPAGTSS SSPASAESSS GGGESEDWLR YLLDFEVEEV DVNVEELVAV 120 KEKLEEMRER AAMALDWNFA NSLLLSGDFD HDSLPPNDNV DDSSVLPSWI DLFEGCI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51870.2 | 1e-16 | MIKC_MADS family protein |